Transcript Information: R_Transcript_120516.p1


Annotated TAIR IDAT4G23650.1
Annotated Gene Namecalcium-dependent protein kinase 6
Annotated Gene Symbol(s)CDPK6, CPK3
Annotation TypeOrtholog
Chromosome Positionchr4:12324967-12327415 | Reverse length=529
E-Value9.6E-283
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.09560784304
Replicate 216.72463929712
Replicate 318.088423825927
Condition 2: 8 Hour
Replicate 111.609677345677
Replicate 215.96104324526
Replicate 320.498801648885
Condition 3: 24 Hour
Replicate 116.149629911902
Replicate 216.959733560685
Replicate 314.302482890231


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_120516.p1 GENE.R_Transcript_120516~~R_Transcript_120516.p1 ORF type:complete len:580 (+),score=97.69,Pkinase|PF00069.21|8.4e-72,Pkinase|PF00069.21|1.2e+03,Pkinase|PF00069.21|6.5e+02,EF-hand_1|PF00036.28|6.7e-08,EF-hand_1|PF00036.28|0.00018,EF-hand_1|PF00036.28|6.4e-06,EF-hand_1|PF00036.28|3.6e-08,EF-hand_7|PF13499.2|2.7e-12,EF-hand_7|PF13499.2|2.6e-12,Pkinase_Tyr|PF07714.13|1.6e-26,EF-hand_6|PF13405.2|3.6e-06,EF-hand_6|PF13405.2|0.29,EF-hand_6|PF13405.2|3.4e-07,EF-hand_6|PF13405.2|0.00072,EF-hand_5|PF13202.2|1.9e-05,EF-hand_5|PF13202.2|0.0074,EF-hand_5|PF13202.2|0.00073,EF-hand_5|PF13202.2|0.0058,EF-hand_8|PF13833.2|0.00056,EF-hand_8|PF13833.2|6e-07,EF-hand_8|PF13833.2|4.2e-10,EF-hand_9|PF14658.2|0.028,EF-hand_9|PF14658.2|0.0061,EF-hand_4|PF12763.3|0.021,EF-hand_4|PF12763.3|0.022,SPARC_Ca_bdg|PF10591.5|0.18,SPARC_Ca_bdg|PF10591.5|0.019,Kinase-like|PF14531.2|7.5,Kinase-like|PF14531.2|0.0021,EFhand_Ca_insen|PF08726.6|7.8e+02,EFhand_Ca_insen|PF08726.6|0.55,EFhand_Ca_insen|PF08726.6|0.19 R_Transcript_120516:105-1742(+)
ATGGGCAACTGTAATGGCCAACCTTCCCGACCCTACACAACTGATGACACCACCACCACAACCACCAACTATTCTCCCTCCAAACCCTCACCCCAGCCCAAACCACAACCAGCCCACCGGCCCACCACCACCACAACAGGCTCATCATCATCCTCCGGCAAGATCGGCCGCATATTGGGCCGCCCAATGGAAGACGTCCGATCCAACTACATTTTCGGGCGCGAGCTAGGCCGAGGCCAATTCGGGGTTACCTACTTAGTAACCCACAAAGACACCAAACAACAGCTGGCTTGCAAATCAATAGCCACTCGGAAACTTATCAACCAAGATGACATGGATGACGTACGCCGTGAGGTCCAGATCATGCACCACCTGACGGGTCACCGTAATATTGTCGAATTAAAGGGCGCTTATGAGGACCGCCATTCAGTTAATCTAGTTATGAAGCTTTGTGCTGGCGGTGAGCTCTTTGATCGGATTATTGCTAAGGGTCATTACTCTGAACGTGAAGCTGCTAAATTGTTTCGCCAAATCGTTACTGTTGTTTATAATTGTCATTCTATGGGAGTTATTCATCGAGATCTTAAGCCTGAGAATTTCCTCTTTCTCAGTCCTGATGAAGACTCTCCTCTTAAAGCTACTGATTTTGACCTTTCTGTCTTCTTCAAACCAGGAGAAGTCTTCAGAGACCTTGTTGGTAGTGCATATTATGTTGCTCCTGAGGTATTGCGTCGTAATTATAGTGCTGAAGCAGATATTTGGAGTGCTGGGGTGATACTATACATCCTCCTTAGTGGTGTTCCACCATTCTGGGGAGAGAATGAGCAGGGTATTTTTGATTCTATTGTACGGGGAGACCTTGATTTCTCATCTGAACCATGGCCCTCAATTTCCCGCAGCGCTAAAGATCTTGTGAAGAAAATGTTACGACAGGATCCCAAGGAAAGGCTTTCTGCTCTTGATGCTTTAAATCATCCATGGATGAGAGAAGATGGAGTTGCTTCTGATAAGCCAATTGATATTGCTGTTTTGACTAGAATGAAGCAGTTCAGGGCAATGAACAAACTGAAAAAAGTCGCTCTGAGGGTAATTGCAGAGAACCTCTCTGAAGAAGAAATTATGGGTCTCAAGGAAATGTTCAAATCTATGGATACAGACAACAGTGGGACCATTACTTTTGAAGAGTTAAAGGCTGGTCTCCCAAAACTGGGAACTAAACTTTCTGAGAGTGAAGTGAGGCAATACATGGAAGCGGCTGATGTGGATGGGAATGGAACAATTGATTACATGGAGTTTATCACAGCCACAATGCATATGAATAGGTTGGAAAGGGAAGACCATTTGTACAAGGCTTTTGAATATTTCGATGAGGACAAGAGCGGGTACATAACAATGCAAGAGTTAGAACAAGCCTTGAAGAAATATAACATGGGTGATGAGAAAACAATACGGGAGATACTTGCAGAAGTTGACTCTGATAATGATGGTAGAATCAACTACGAAGAATTCGTAGCTATGATGAAGAAAGGCAACCCTGATTTGGGTCAAAAGAGGAGGAGAAGATACTTGATATTGGCTTCCCTAATTAGTTCGTGTTCGGGTTATTTCGACAATGATCATTTTGAGCTCACGAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_120516.p1 GENE.R_Transcript_120516~~R_Transcript_120516.p1 ORF type:complete len:580 (+),score=97.69,Pkinase|PF00069.21|8.4e-72,Pkinase|PF00069.21|1.2e+03,Pkinase|PF00069.21|6.5e+02,EF-hand_1|PF00036.28|6.7e-08,EF-hand_1|PF00036.28|0.00018,EF-hand_1|PF00036.28|6.4e-06,EF-hand_1|PF00036.28|3.6e-08,EF-hand_7|PF13499.2|2.7e-12,EF-hand_7|PF13499.2|2.6e-12,Pkinase_Tyr|PF07714.13|1.6e-26,EF-hand_6|PF13405.2|3.6e-06,EF-hand_6|PF13405.2|0.29,EF-hand_6|PF13405.2|3.4e-07,EF-hand_6|PF13405.2|0.00072,EF-hand_5|PF13202.2|1.9e-05,EF-hand_5|PF13202.2|0.0074,EF-hand_5|PF13202.2|0.00073,EF-hand_5|PF13202.2|0.0058,EF-hand_8|PF13833.2|0.00056,EF-hand_8|PF13833.2|6e-07,EF-hand_8|PF13833.2|4.2e-10,EF-hand_9|PF14658.2|0.028,EF-hand_9|PF14658.2|0.0061,EF-hand_4|PF12763.3|0.021,EF-hand_4|PF12763.3|0.022,SPARC_Ca_bdg|PF10591.5|0.18,SPARC_Ca_bdg|PF10591.5|0.019,Kinase-like|PF14531.2|7.5,Kinase-like|PF14531.2|0.0021,EFhand_Ca_insen|PF08726.6|7.8e+02,EFhand_Ca_insen|PF08726.6|0.55,EFhand_Ca_insen|PF08726.6|0.19 R_Transcript_120516:105-1742(+)
MGNCNGQPSRPYTTDDTTTTTTNYSPSKPSPQPKPQPAHRPTTTTTGSSSSSGKIGRILGRPMEDVRSNYIFGRELGRGQFGVTYLVTHKDTKQQLACKSIATRKLINQDDMDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMKLCAGGELFDRIIAKGHYSEREAAKLFRQIVTVVYNCHSMGVIHRDLKPENFLFLSPDEDSPLKATDFDLSVFFKPGEVFRDLVGSAYYVAPEVLRRNYSAEADIWSAGVILYILLSGVPPFWGENEQGIFDSIVRGDLDFSSEPWPSISRSAKDLVKKMLRQDPKERLSALDALNHPWMREDGVASDKPIDIAVLTRMKQFRAMNKLKKVALRVIAENLSEEEIMGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQYMEAADVDGNGTIDYMEFITATMHMNRLEREDHLYKAFEYFDEDKSGYITMQELEQALKKYNMGDEKTIREILAEVDSDNDGRINYEEFVAMMKKGNPDLGQKRRRRYLILASLISSCSGYFDNDHFELTN*

Click here to download the sequence:
Link to NCBI Protein BLAST