Transcript Information: R_Transcript_120943.p1


Annotated TAIR IDAT1G76160.1
Annotated Gene NameSKU5 similar 5
Annotated Gene Symbol(s)sks5
Annotation TypeOrtholog
Chromosome Positionchr1:28578211-28581020 | Reverse length=541
E-Value1.4E-276
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1032009368237
Replicate 20.80755001601146
Replicate 31.1747044921104
Condition 2: 8 Hour
Replicate 11.1211476624196
Replicate 20.69621793278417
Replicate 30.96409653478246
Condition 3: 24 Hour
Replicate 11.2193707135594
Replicate 20.36354822347105
Replicate 30.64139793954278


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_120943.p1 GENE.R_Transcript_120943~~R_Transcript_120943.p1 ORF type:complete len:546 (+),score=52.60,Cu-oxidase|PF00394.18|8.7e-37,Cu-oxidase|PF00394.18|6.2e+02,Cu-oxidase_3|PF07732.11|7.1e-36,Cu-oxidase_3|PF07732.11|3.4e+03,Cu-oxidase_3|PF07732.11|9.7e+02,Cu-oxidase_3|PF07732.11|5.9e+03,Cu-oxidase_2|PF07731.10|24,Cu-oxidase_2|PF07731.10|59,Cu-oxidase_2|PF07731.10|3.1e-25 R_Transcript_120943:152-1789(+)
ATGGCCCTTCATAAAAACTTGTTGGATTATCATCAATGGAGTATAGCTCTAATGATTTCATTCTTCTATATTGCTTCTGCTGATAGTCCTTACAGGTACTTCACCTGGAAGGTCACCTATGGCCACATCTATCCCCTTGGCATTCAACAACGGGGAATACTTATCAATGATCAATTTCCAGGTCCTGATATATATGCTGTCACCAATGATAACCTCATAATCAACGTTTTCAATTATTTGGATGAACCCTTCCTGATTACCTGGGATGGGATTCAGCAAAGGAAAAACTCATACGAAGATGGAGTATATGGAACGACATGCCCGATTCCAGCGGGCAGCAACTTCACATACAAAATGCAAGTGAAAGATCAAATTGGGAGCTTCTTCTATTTCCCCTCAACAGCTTTCCACAAGGCAGCTGGTGCCTTTGGTGGGATTCGGATTTCCAGCAGACCACTCATTCCTGTTCCCTTTCCCCAGCCAGCAAATGACTTTACCCTTCTCACTGGGGATTGGTACCTTAAAGATCATGCGGACTTGAGGGCCATTTTGGAACGTGGAAAGAAGCTACCGTTTCCTGATGGGAATCATATCAATGGGAGACGACCAAATGATGTAGCTTTTACTGTTGAAATGGGGAAGACATACAGATTCAGAATATCAAACGTGGGGCTTCAGAATTCACTTAACATAAGATTTGAAGGTCATAAAATGAAATTAGTGGAAGTAGAAGGGACCCACACAATGCAAGACTCTTATTCATCATTGGATGTCCACGTGGGCCAGTCATATTCTGTTTTAGTCACGGCTGATCAAGAGGTAAAAGACTACTACATTGAGGTTTCGACCCGATTCACCAACCGGATCCTTACTACCACCGCTATCCTCCATTATGAGGGCTCCACAAGCCCGGTATCCGGCCCTCCCCCTAGCGGGCCCACCATAGAGATTGGCTGGTCTCTTGAGCAAGCACGAAGCATAAGGACCAATTTAACGGCAAGTGGGCCAAGACCAAATCCACAAGGGTCATACCATTACGGAGAAATCCCAGTGAAGAGGACAATAAGGCTAAGGAGTTATGCAGGTCGAGTGGATGAAAAACAAAGATATGGTGTCAACAGTGTTTCTTTCATTCCAGCAGATACACCACTAAAGCTAGCCGATAACTTCAACATTCCCGGTGTATTCCGGGTTGGAAGCATCCCTGATCACCCAATTGGCAAGCGAATGTACCTTGACGCCGGGGTTCTGGGGGCAGATTACCGCGACTTTGTGGAGATTGTATTTGAGAACAAGGAGAAAATCGTCCAATCTTGGCACCTTGACGGCTACAACTTCTTCGTCGTAGGAATGGATGGCGGAAAATGGACACCTAAGAGCAGGTCACAGTACAATCTTCATGATGCAGTTTCACGTTGCACCACGCAAGTGTACCCAAGATCCTGGACCGCGGTGTATGTAGCATTAGACAACGTTGATATGTGGAATGTGAGGACTCAGTTCTGGGCAAGGCAGTATCTTGGAGAACAATTTTACTTGAGAGTTTATACACCATCACATTCTGTCAGAGATGAATACCCATACCTGATAACGTCATTCTATGCGGCAGGGCTCTCGGCCATGTTTAGACTTGCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_120943.p1 GENE.R_Transcript_120943~~R_Transcript_120943.p1 ORF type:complete len:546 (+),score=52.60,Cu-oxidase|PF00394.18|8.7e-37,Cu-oxidase|PF00394.18|6.2e+02,Cu-oxidase_3|PF07732.11|7.1e-36,Cu-oxidase_3|PF07732.11|3.4e+03,Cu-oxidase_3|PF07732.11|9.7e+02,Cu-oxidase_3|PF07732.11|5.9e+03,Cu-oxidase_2|PF07731.10|24,Cu-oxidase_2|PF07731.10|59,Cu-oxidase_2|PF07731.10|3.1e-25 R_Transcript_120943:152-1789(+)
MALHKNLLDYHQWSIALMISFFYIASADSPYRYFTWKVTYGHIYPLGIQQRGILINDQFPGPDIYAVTNDNLIINVFNYLDEPFLITWDGIQQRKNSYEDGVYGTTCPIPAGSNFTYKMQVKDQIGSFFYFPSTAFHKAAGAFGGIRISSRPLIPVPFPQPANDFTLLTGDWYLKDHADLRAILERGKKLPFPDGNHINGRRPNDVAFTVEMGKTYRFRISNVGLQNSLNIRFEGHKMKLVEVEGTHTMQDSYSSLDVHVGQSYSVLVTADQEVKDYYIEVSTRFTNRILTTTAILHYEGSTSPVSGPPPSGPTIEIGWSLEQARSIRTNLTASGPRPNPQGSYHYGEIPVKRTIRLRSYAGRVDEKQRYGVNSVSFIPADTPLKLADNFNIPGVFRVGSIPDHPIGKRMYLDAGVLGADYRDFVEIVFENKEKIVQSWHLDGYNFFVVGMDGGKWTPKSRSQYNLHDAVSRCTTQVYPRSWTAVYVALDNVDMWNVRTQFWARQYLGEQFYLRVYTPSHSVRDEYPYLITSFYAAGLSAMFRLA*

Click here to download the sequence:
Link to NCBI Protein BLAST