Transcript Information: R_Transcript_121535.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1492784745818
Replicate 22.2179190580597
Replicate 32.6616983826515
Condition 2: 8 Hour
Replicate 11.810574520747
Replicate 21.7321809876975
Replicate 33.1317919732358
Condition 3: 24 Hour
Replicate 13.6376807226996
Replicate 24.0382868391198
Replicate 32.0038039502089


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_121535.p1 GENE.R_Transcript_121535~~R_Transcript_121535.p1 ORF type:complete len:284 (+),score=37.48,DDE_Tnp_4|PF13359.2|3.3e-23 R_Transcript_121535:533-1384(+)
ATGCATGGATTTAGATGTAAGTATGGCTTAAGACCTTCTGATCAAATGTCTATTTTGGAGAAAGTTGGTATCTTTTTGTATGTCCTTAGTAATGGTGCCTCAAATAGCGATTGCCATGAGCGATTTCAACGCTCTGGTGAAACTATTAGCCGAATTTTCAAAGTTTTAGATGCCATGGATGATTTTTCAAGGGACATATTAAAGCCAAGAGATCCTGATTTTAAAGAAATGCCACCTTATATTCCCAATAATCCTCAATATATGCCACACTTTAAGGATTGCATTGGAGCTATAGATGGAACTCATATAAATGTAATTATTCCTGAGGAGAAACAATCAGCTTATAGAGGGCGAAAACAGGAAATGACGATGAATGTCTTTGCAGCATGTGACTTTGACTTGCTATTTATTTATGTTTTGCCTGGATTGGAAGGCTCGACACATGATTCACGTAAATATTATTTGGCGGACAAAGGTTATTCAGATGAAGAAGGATACTTGACTCCGTATCCAAAGGTAGGGTACCATCAATCAGAATTTCGTGGAGGTGGTCCTAAGGGATATCGAGAAATTTTCAATTATGCTCATTCATCATTAAGGACTTGTATTGAAAGGGCATTTGAATTTCTCAAGACTCGATGGAAAATATGGATGGAAATGCCAATGAATTCATTAGATGACCAAACTAGAATTGTTTGTGCTGCTTGTGCTTTGCATAACTACATCAGGCTAAGCAACTTCGGTGATCCCGCCTTCAAGTTTATGGATGAAAATCTTGATTTCATACCTCCATATGTAGGCAATTCTGTGTTTAATTGTAATGCAAGAAGATACACAAGGATCAAGATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_121535.p1 GENE.R_Transcript_121535~~R_Transcript_121535.p1 ORF type:complete len:284 (+),score=37.48,DDE_Tnp_4|PF13359.2|3.3e-23 R_Transcript_121535:533-1384(+)
MHGFRCKYGLRPSDQMSILEKVGIFLYVLSNGASNSDCHERFQRSGETISRIFKVLDAMDDFSRDILKPRDPDFKEMPPYIPNNPQYMPHFKDCIGAIDGTHINVIIPEEKQSAYRGRKQEMTMNVFAACDFDLLFIYVLPGLEGSTHDSRKYYLADKGYSDEEGYLTPYPKVGYHQSEFRGGGPKGYREIFNYAHSSLRTCIERAFEFLKTRWKIWMEMPMNSLDDQTRIVCAACALHNYIRLSNFGDPAFKFMDENLDFIPPYVGNSVFNCNARRYTRIKI*

Click here to download the sequence:
Link to NCBI Protein BLAST