Transcript Information: R_Transcript_121620.p1


Annotated TAIR IDAT1G75850.1
Annotated Gene NameVPS35 Homolog B
Annotated Gene Symbol(s)VPS35B
Annotation TypeOrtholog
Chromosome Positionchr1:28478053-28483874 | Reverse length=790
E-Value3.2E-78
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 164.683930383285
Replicate 258.789641165635
Replicate 365.42736925901
Condition 2: 8 Hour
Replicate 153.715866228019
Replicate 264.427290804916
Replicate 366.707169029922
Condition 3: 24 Hour
Replicate 170.164798339671
Replicate 257.343673115501
Replicate 360.191187888968


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_121620.p1 GENE.R_Transcript_121620~~R_Transcript_121620.p1 ORF type:5prime_partial len:160 (+),score=32.79,Vps35|PF03635.13|6.2e-38 R_Transcript_121620:3-482(+)
CAAAGAATGCATGTCTTTGGGGTTGAGAACAGGGATACTTTGACGCACAAAGCCACAGGGTATTCAGCAAAGCTGTTGAAAAAATCTGATCAATGTAGAGCTGTTTACACATGCTCACATCTCTTTTATCAGGATGGTGTAAGAGATGGGGAGAGGGTTCTGGTTTGCTTGAAGCGGGCTCTTAAAATTGCAAACGCTGCTCAACAAATGGCCAATGCTGCACGGGGAAGCGGTGGATCAGTTATGCTCTTCATTGAAATCCTCAACAAGTATCTCTATTTCTTTGAGAAGGGAAACAACCAGATCACAGTAAATACAATCCAAGACCTGATGGAACTAATCACCACGGAGATGCAAAGCGACAATACTACAACAGATCCAGCTGCTGAAGCTTTCTTTGCGAGCACGTTGAGGTACATCCAATTTCAGAAACAAAAAGGTGGTGCAGTCAGTGAAAAATATGAGCTTGTCAAAGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_121620.p1 GENE.R_Transcript_121620~~R_Transcript_121620.p1 ORF type:5prime_partial len:160 (+),score=32.79,Vps35|PF03635.13|6.2e-38 R_Transcript_121620:3-482(+)
QRMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVYTCSHLFYQDGVRDGERVLVCLKRALKIANAAQQMANAARGSGGSVMLFIEILNKYLYFFEKGNNQITVNTIQDLMELITTEMQSDNTTTDPAAEAFFASTLRYIQFQKQKGGAVSEKYELVKA*

Click here to download the sequence:
Link to NCBI Protein BLAST