Transcript Information: R_Transcript_122029.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value3E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9792367300297
Replicate 21.201595505752
Replicate 31.517916346733
Condition 2: 8 Hour
Replicate 11.2537942894674
Replicate 20.74087259112362
Replicate 31.4761852010556
Condition 3: 24 Hour
Replicate 11.3830004354039
Replicate 20.73074652950708
Replicate 31.9778046403823


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_122029.p2 GENE.R_Transcript_122029~~R_Transcript_122029.p2 ORF type:5prime_partial len:332 (+),score=32.71,gag_pre-integrs|PF13976.2|7.8e+03,gag_pre-integrs|PF13976.2|8.7e-08 R_Transcript_122029:2-997(+)
GAAATAGTTAATAATGGTACTTCCAAATCATGTGCTAATGGTTTGTTGACTGCAGGCACCACTACTCAGGAAGGAGTGTTAGGTTCTCCCCCAGTTCCATTGGTTTGTCGTGTTTATTATTATCCAGGTCATCCTGCCTCTCAGTGTCCCTTCCGTACCACTTCTGCCACTGCGTCTACCACTCTTCCAGGGTCTGCTCAGTCTTTTGCATCCATGACCATCGGTGAGACCAATGACGAGCCTTGGTATCCTGACTCTGCTGCGGCAGCCCATATGACTCCATCGGAAGGTAACTTGATTTCTTCAAAACCTTATACTGATAAAAATTATATAATTGTTGCTAATGGTACAAAGGTTCCCATTGCTCGTTCTGGTATCTCTGTGTTGCCCACTCCCTCAAAACCATTAGTGCTTCGGGATGTCTACCAAACACCTCACCTTAAACACAATCTCCTATCAATTCAGCGTTTGTGTCATGATAATAATTGTTTTGTTAACTTTGACTCCTCTTCTGTTAAAATTAAGGACAAGAGCACAGGAGCCTCCCTGCTTGAGGCGCCAAATAAAGGAAGTGTCTACCTTATTCATCCAGTCCGTTTGTCTATTCCTGCTTTTTTCAGTGCCCAGCAATCCAGTTCGTTTTGGCATCAATGTTTAGGTCATGCAGGTCAACCTACTTTGGATTATCTTAAGCGTAGTAATTTAATTTCTAGTATTTCTAAAGTTCATGAACATTGTGTGTCATGTAAGTTGGCCAAATCCCACAAATTGCCTTTTACTGTTGTTCATCATTTTGCTACAAAACCTTTATATTTCATACATTCCGATGTTTGGCAATCTCCTGTTGTTTCAAATCTTGGTTTTAAGTATTATGTTGTTTTTGTTGATGATTACTCTCGCTTTACTTGGCTTTATCCAATGAAACACAAAAATGAGGTTTTTGACATCTTTTGCCGTTTTAAATACATGTGGAAAACTTATTGGATTGCAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_122029.p2 GENE.R_Transcript_122029~~R_Transcript_122029.p2 ORF type:5prime_partial len:332 (+),score=32.71,gag_pre-integrs|PF13976.2|7.8e+03,gag_pre-integrs|PF13976.2|8.7e-08 R_Transcript_122029:2-997(+)
EIVNNGTSKSCANGLLTAGTTTQEGVLGSPPVPLVCRVYYYPGHPASQCPFRTTSATASTTLPGSAQSFASMTIGETNDEPWYPDSAAAAHMTPSEGNLISSKPYTDKNYIIVANGTKVPIARSGISVLPTPSKPLVLRDVYQTPHLKHNLLSIQRLCHDNNCFVNFDSSSVKIKDKSTGASLLEAPNKGSVYLIHPVRLSIPAFFSAQQSSSFWHQCLGHAGQPTLDYLKRSNLISSISKVHEHCVSCKLAKSHKLPFTVVHHFATKPLYFIHSDVWQSPVVSNLGFKYYVVFVDDYSRFTWLYPMKHKNEVFDIFCRFKYMWKTYWIAK*

Click here to download the sequence:
Link to NCBI Protein BLAST