Transcript Information: R_Transcript_122036.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value3E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.66731255103273
Replicate 20.36122667382878
Replicate 31.1822832307692
Condition 2: 8 Hour
Replicate 10.42126219264078
Replicate 21.2021979484508
Replicate 30.89782160057828
Condition 3: 24 Hour
Replicate 10.98743256893351
Replicate 21.0434746141778
Replicate 31.6003913104398


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_122036.p1 GENE.R_Transcript_122036~~R_Transcript_122036.p1 ORF type:complete len:465 (+),score=63.78,UBN2|PF14223.2|3.9e-14,UBN2_2|PF14227.2|2.1e-12,UBN2_3|PF14244.2|3.4e-11 R_Transcript_122036:617-2011(+)
ATGGTTGCTCCTCCTCCATCATCATCTGGTAGTGATGTTCCTCCTCTAACCCATATTGCTGCATCTGGTTCTGGCGTCTTTGCTTCTGTTCCTCTCTTTCCAGAACCCGGTTCTGGGGTGTTTGAGCAGCCCGGGTTCGTTACCCCGCCACGACCAACGCCTGGTCCTGTGGCCACGACAACCTCTTTTCCCTATTTTGCTTGGTCCAGCGCTTATCCTCTCCCTTCGCTTCCGCCTTCTCTCTTTCCCAACAGCCTCTATGAGCCCGGTGAGTTGAGTTCTGCTGTTCGTCCTCTGCCTCAATATGCTTCTGTTTCAATGGGTGTCTTCCCAAACTCCTTTGGTGGGCTCTCGTCGCCGGGTCTTCCTGCTATGGGCCATACTTTCCCTCCGGTGGCTGCACCCAATGTCACTAATCTTGTGACTACCATGCTTGCTACTGTCGAGGACTTCCTCTCTTGGCGAACCCAGTTCACTGCGTTCCTGGTCTCTCATGGTCTTCTGGGTTATGTTGATGGTTTGATCCGTCGTCCTCTCGAGTACTTCCGCGACACTCAAGGTATTCATTGTATCAATGCTGATTATCAATCTTGGCTTCGCATTGATCAAAGTATACGTTGTTGGTTGTATGCTACTCTGTCCAAAGAATTATTGGCTGAATTTCATAATGTTAATCATTCCTTTGATATTTGGACACACTTGCATACTCGTTTTAATACTGATAGTCTTGCCCGCTCCATTGAACTTAAGAGGTCTCTCACAATGTTACGTAAAATTGATCAACAAAGTATTGAGTTATATTTGCGTGATGTTAAGAAAATTGGCGATGCATTAGCTTCAATTCGGTGTCCTGTCTCTAATCAAGATTTAGTGCAATACACTTTAATGGGTTTGCCGTCGGAGTATGAGACTATGATAACCATATTGCTTCACCAATCTGGAAATTTGTTGTTTGATGATCTTCGGGCTACTCTTAACCTTCATGAGCAACGTCTGCGCCTTCTTCGTGGTCAAGAAAATCCTGCTCCCCATCATGCCTTTGCCACGGGTACAGGGGGTGCTGGTGCGTCTGGTTCCTCCACAGAACCTGGTTCTAGGTCGCGTCACAACAACAATGGTCGTAACAGCAACCGGAACAACAACAATGGCTTCCGCGGCAATGCTCGACATAACACCAGAAAGAATCATAACAACCGCAATGGTCAAGGCCATGGTGGACGTGGCCAGAAACGTCGTAACGACACGCAACCTGGTTCCTCCGGTGCCTCGCAACCTGGTTTGACTGCTTCTCTTCTAAGCTTGTTGTGCCTATGTCATTTCATAATACTGGTACCTCAAAATTGTGTTCTAATAATTTTTTGGCTGCAGGAGCCTCTAATAGTGACGGAGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_122036.p1 GENE.R_Transcript_122036~~R_Transcript_122036.p1 ORF type:complete len:465 (+),score=63.78,UBN2|PF14223.2|3.9e-14,UBN2_2|PF14227.2|2.1e-12,UBN2_3|PF14244.2|3.4e-11 R_Transcript_122036:617-2011(+)
MVAPPPSSSGSDVPPLTHIAASGSGVFASVPLFPEPGSGVFEQPGFVTPPRPTPGPVATTTSFPYFAWSSAYPLPSLPPSLFPNSLYEPGELSSAVRPLPQYASVSMGVFPNSFGGLSSPGLPAMGHTFPPVAAPNVTNLVTTMLATVEDFLSWRTQFTAFLVSHGLLGYVDGLIRRPLEYFRDTQGIHCINADYQSWLRIDQSIRCWLYATLSKELLAEFHNVNHSFDIWTHLHTRFNTDSLARSIELKRSLTMLRKIDQQSIELYLRDVKKIGDALASIRCPVSNQDLVQYTLMGLPSEYETMITILLHQSGNLLFDDLRATLNLHEQRLRLLRGQENPAPHHAFATGTGGAGASGSSTEPGSRSRHNNNGRNSNRNNNNGFRGNARHNTRKNHNNRNGQGHGGRGQKRRNDTQPGSSGASQPGLTASLLSLLCLCHFIILVPQNCVLIIFWLQEPLIVTEF*

Click here to download the sequence:
Link to NCBI Protein BLAST