Transcript Information: R_Transcript_122089.p1


Annotated TAIR IDAT4G15560.1
Annotated Gene NameDeoxyxylulose-5-phosphate synthase
Annotated Gene Symbol(s)CLA1, DEF, CLA, DXS, DXPS2
Annotation TypeOrtholog
Chromosome Positionchr4:8884218-8887254 | Forward length=717
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1274251597047
Replicate 24.1874644088684
Replicate 33.8606861117111
Condition 2: 8 Hour
Replicate 12.6824402610746
Replicate 22.0727783729189
Replicate 33.0337663817782
Condition 3: 24 Hour
Replicate 14.8043725799549
Replicate 23.4074135926454
Replicate 34.1807975244635


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_122089.p1 GENE.R_Transcript_122089~~R_Transcript_122089.p1 ORF type:complete len:712 (+),score=142.48,DXP_synthase_N|PF13292.2|9e-112,Transket_pyr|PF02779.20|1.1e-41,Transketolase_C|PF02780.16|1.8e-29,E1_dh|PF00676.16|4e-07 R_Transcript_122089:141-2276(+)
ATGGCGGTGCAAGGCGCTTTCACAATCCCACCCTCACCTCTACATTCTTGTTTAACGCCTTCTCTACGAAACATCAGCCACCAAAGACGGCTGATCATGAGAGCTTCAGCTAGCAGTGACTCATATGAAGAGAGTAAGAAGTTGATTAGGAAGGAAATTGATGGCTGGAAAATAGAGTACACAGGGGAGAAACCAGCCACTCCCTTGCTGGACACTATTAAATACCCTGTGCACATGAGAAACCTGTCTACTGAGGATCTTGCACAGCTAGCAGCAGAGCTTAGAGCAGAAATGGTATATGCAGTGGCAAAAACAGGTGGGCACCTGGGCGCAAGCTTGGGGGTAGTGGAGCTAACAGTGGCCCTACACCATGTCTTTAACACACCTGACGACAGAATCATTTGGGATGTTGGTCATCAGGCATATCCACACAAAATTCTAACAGGACGAAGATCTAAGATGCAAACAATAAGGAAGACCTCAGGACTTGCAGGGTTTCCAAAAAGAGATGAAAGTATATATGATGCTTTTGGTACGGGGCATAGTTCAACTAGCATATCTGCTGGTCTTGGCATGGCAGTTGCGAGAGACCTTTTAGGAAAAAAGAACAATGTTATTTCAGTGATTGGGGATGGAGCGATGACTGCAGGACAGGCATATGAGGCTTTAAATAATGCAGGGTACCTTGACACTAACCTCATTGTCATACTGAATGACAATAAGCAAGTTTCTTTGCCCACCGCAACTCTTGATGGGCCTGCAACTCCTGTTGGAGCACTCAGCAGCGCTCTTTCAAAGCTCCAAGCAAGTCCCAAATTCCGAAAACTTCGGGAAGCGGCCAAGAGCATCACAAAGCAAATTGGAGGAGAAACTCACAAGGTTGCAGCAAAAGTGGATGAATATGCAAGAGGCATGATCGGTGGTACAAGATCTACACTATTTGAAGAACTTGGTTTGTACTACATTGGGCCTGTGGATGGGCATAACATAGATGACCTGATCACAATATTAAAGCAAGTCAAAGAAATGCCAGCACCAGGGCCAGTTTTAATTCACACAGTCACTGAGAAAGGGAAGGGCTACCCACCAGCAGAGGCAGCATCTGACAGAATGCATGGTGTCGTAAAGTTCAACCCAGAATCAGGAAAGAAGTTCAAGCCCAAATCCCCTACACTTTCATATACAGAATACTTTGCTCAGGCTTTAACAAAAGAAGCGGAGGTAGATGAGAAGATTGTGGCTCTTCATGCTGCAATGGGTGGTGGAACAGGTCTAAACTACTTCCAGAAGAGATTTCCCAATCGTTGCTTTGATGTGGGCATTGCCGAGCAGCATGCTGTAACATTTGCAGCAGGTCTGGCAACAGAGGGCCTCAAGCCTTTCTGCACCGTCTACTCATCGTTTCTACAGCGAGGATATGATCAGGTGGTGCATGATGTAGATCTCCAAAGACTGCCCGTCAGATTTGCCATGGATAGAGCCGGTTTAGTGGGTGCAGATGGACCAACCCACTGTGGTGCGTTTGATATCACCTACATGGCTTGTTTGCCAAATATGATTGTTATGGCTCCATCAGATGAAGCAGAGCTGATGCACATGGTTGCAACAGTGGCAGCTATAGATGACAGGCCAAGCTGCTTCAGATACCCAAGGGGGAAGGGGATAGGAGTATCCCTTCCACCTGACAATAAAGGAACACCACTTGAGATTGGAAGGGGGAGAGTATTGGTTGAAGGGATCAAGGTTGCAATGCTGGGTTATGGCTCTATGGTTCAACAATGCCTAGAAGCCGCATCTTTGCTCAAAGAGCGGGACATTTTATTGACAGTGGCTGATGCGAGGTTTTGCAAACCTCTGGACGGAGATCTTATCAGGAAACTTGCAAATGAACATGAAATACTCATAACCGTAGAGGAGGGCTCTATAGGAGGTTTTGCTTCTCATGTGTCACACTTCCTTTGTCTCAATGGTCTTTTGGATGGACCCCTCAAGTTCAGAGCAATGGTCCTTCCAGACAGATACATTGATCATGGAGATTACCAAGACCAGTTGGAAGAAGCAGGATTGACTTCAAAACATATTGCAGCAACTGTGTTGTCTATGCTGGGAATGCAAATGGAAGCTCTTACACTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_122089.p1 GENE.R_Transcript_122089~~R_Transcript_122089.p1 ORF type:complete len:712 (+),score=142.48,DXP_synthase_N|PF13292.2|9e-112,Transket_pyr|PF02779.20|1.1e-41,Transketolase_C|PF02780.16|1.8e-29,E1_dh|PF00676.16|4e-07 R_Transcript_122089:141-2276(+)
MAVQGAFTIPPSPLHSCLTPSLRNISHQRRLIMRASASSDSYEESKKLIRKEIDGWKIEYTGEKPATPLLDTIKYPVHMRNLSTEDLAQLAAELRAEMVYAVAKTGGHLGASLGVVELTVALHHVFNTPDDRIIWDVGHQAYPHKILTGRRSKMQTIRKTSGLAGFPKRDESIYDAFGTGHSSTSISAGLGMAVARDLLGKKNNVISVIGDGAMTAGQAYEALNNAGYLDTNLIVILNDNKQVSLPTATLDGPATPVGALSSALSKLQASPKFRKLREAAKSITKQIGGETHKVAAKVDEYARGMIGGTRSTLFEELGLYYIGPVDGHNIDDLITILKQVKEMPAPGPVLIHTVTEKGKGYPPAEAASDRMHGVVKFNPESGKKFKPKSPTLSYTEYFAQALTKEAEVDEKIVALHAAMGGGTGLNYFQKRFPNRCFDVGIAEQHAVTFAAGLATEGLKPFCTVYSSFLQRGYDQVVHDVDLQRLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMIVMAPSDEAELMHMVATVAAIDDRPSCFRYPRGKGIGVSLPPDNKGTPLEIGRGRVLVEGIKVAMLGYGSMVQQCLEAASLLKERDILLTVADARFCKPLDGDLIRKLANEHEILITVEEGSIGGFASHVSHFLCLNGLLDGPLKFRAMVLPDRYIDHGDYQDQLEEAGLTSKHIAATVLSMLGMQMEALTL*

Click here to download the sequence:
Link to NCBI Protein BLAST