Transcript Information: R_Transcript_122909.p1


Annotated TAIR IDAT1G18530.1
Annotated Gene NameEF hand calcium-binding protein family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6376783-6377256 | Forward length=157
E-Value2E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.119315686204
Replicate 213.778822148196
Replicate 310.141003623297
Condition 2: 8 Hour
Replicate 18.5445466222158
Replicate 210.248737510543
Replicate 310.11574133532
Condition 3: 24 Hour
Replicate 18.7287496230333
Replicate 28.959948924297
Replicate 38.6638831052302


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_122909.p1 GENE.R_Transcript_122909~~R_Transcript_122909.p1 ORF type:5prime_partial len:192 (-),score=35.59,EF-hand_1|PF00036.28|0.00021,EF-hand_1|PF00036.28|0.00017,EF-hand_1|PF00036.28|8e-06,EF-hand_1|PF00036.28|1.5e-08,EF-hand_7|PF13499.2|1.3e-10,EF-hand_7|PF13499.2|5.6e-16,EF-hand_6|PF13405.2|8.2e-06,EF-hand_6|PF13405.2|0.0067,EF-hand_6|PF13405.2|1.4e-05,EF-hand_6|PF13405.2|1.1e+03,EF-hand_6|PF13405.2|0.0034,EF-hand_5|PF13202.2|0.00018,EF-hand_5|PF13202.2|0.016,EF-hand_5|PF13202.2|0.00043,EF-hand_5|PF13202.2|6.3e-06,EF-hand_8|PF13833.2|0.00033,EF-hand_8|PF13833.2|6.8e-05,EF-hand_8|PF13833.2|0.52,EF-hand_8|PF13833.2|1.1e-08,SPARC_Ca_bdg|PF10591.5|0.0043,SPARC_Ca_bdg|PF10591.5|0.29,EF-hand_9|PF14658.2|0.073,EF-hand_9|PF14658.2|0.44 R_Transcript_122909:284-859(-)
CCATTTCCATTTCCATTTCCATTTCTTATCAAACCCCTCTTCATCTTCATAAAAAAAAAAAATCTCATGTCAACCCTAAAAACAGAGAAACTAAACCAACTAAGACACATATTCAACAGATTCGACATGGACTCAGATGGGTCCATAACCCAGCTGGAGCTGGCGGCGCTCCTCCGTTCCCTAGGGGTGAAACCAACAGGGGACCAAATCTATGCATTGTTAACCAACATGGATTCAAATGGAAATGGGTACATTGAGTTCGAGGAGCTAGCAGAAGCCATGCTTCCGGAGCTCGAAAACCATGATATTTTGATCAACCAGGAGCAGCTGCTGGAGGTGTTTCGCTCCTTCGACAGAGACGGCAATGGCTTCATCACGGCGGCTGAGCTGGCGGGCTCCATGGCGAAGATGGGCCACCCCTTGACCTACAAAGAGTTGGCTGAGATGATGAGGGAGGCTGATACTAATGGTGATGGTGTCATTAGTTTTAGTGAATTTGCTTCTATTATGGGTAGATCTGCTGCTGAGATTTTTGGTTTAAATACTAATCATCTTACTTCTTCTTCTTCTTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_122909.p1 GENE.R_Transcript_122909~~R_Transcript_122909.p1 ORF type:5prime_partial len:192 (-),score=35.59,EF-hand_1|PF00036.28|0.00021,EF-hand_1|PF00036.28|0.00017,EF-hand_1|PF00036.28|8e-06,EF-hand_1|PF00036.28|1.5e-08,EF-hand_7|PF13499.2|1.3e-10,EF-hand_7|PF13499.2|5.6e-16,EF-hand_6|PF13405.2|8.2e-06,EF-hand_6|PF13405.2|0.0067,EF-hand_6|PF13405.2|1.4e-05,EF-hand_6|PF13405.2|1.1e+03,EF-hand_6|PF13405.2|0.0034,EF-hand_5|PF13202.2|0.00018,EF-hand_5|PF13202.2|0.016,EF-hand_5|PF13202.2|0.00043,EF-hand_5|PF13202.2|6.3e-06,EF-hand_8|PF13833.2|0.00033,EF-hand_8|PF13833.2|6.8e-05,EF-hand_8|PF13833.2|0.52,EF-hand_8|PF13833.2|1.1e-08,SPARC_Ca_bdg|PF10591.5|0.0043,SPARC_Ca_bdg|PF10591.5|0.29,EF-hand_9|PF14658.2|0.073,EF-hand_9|PF14658.2|0.44 R_Transcript_122909:284-859(-)
PFPFPFPFLIKPLFIFIKKKNLMSTLKTEKLNQLRHIFNRFDMDSDGSITQLELAALLRSLGVKPTGDQIYALLTNMDSNGNGYIEFEELAEAMLPELENHDILINQEQLLEVFRSFDRDGNGFITAAELAGSMAKMGHPLTYKELAEMMREADTNGDGVISFSEFASIMGRSAAEIFGLNTNHLTSSSSS*

Click here to download the sequence:
Link to NCBI Protein BLAST