Transcript Information: R_Transcript_122956.p1


Annotated TAIR IDAT5G48910.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)LPA66
Annotation TypeOrtholog
Chromosome Positionchr5:19832969-19834909 | Reverse length=646
E-Value2.4E-293
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.890740422693
Replicate 21.9634549408906
Replicate 32.0730079272536
Condition 2: 8 Hour
Replicate 12.2897792258359
Replicate 22.394604239403
Replicate 33.1210914188901
Condition 3: 24 Hour
Replicate 12.0430024531441
Replicate 22.5282046390405
Replicate 32.9711816317055


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_122956.p1 GENE.R_Transcript_122956~~R_Transcript_122956.p1 ORF type:complete len:663 (+),score=140.45,PPR|PF01535.16|96,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|0.0022,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|0.091,PPR|PF01535.16|0.18,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|15,PPR_2|PF13041.2|1.5e+04,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|5.2e+03,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|2.6e-07,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|6.8e-12,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|4.1e+03,DYW_deaminase|PF14432.2|1.1e-40,PPR_1|PF12854.3|9.2e+03,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|17,PPR_1|PF12854.3|0.55,PPR_3|PF13812.2|15,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|23,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|22 R_Transcript_122956:168-2156(+)
ATGAACACGTACACTTACAATCCTAATCCTACCATCAATCCAGTCAAACCCCTAGTTTCCCCTTCTTCTTCTACTAACTTCCCAGAAATTTCCAAATGCCAAAACATCAAAAACTTGAAACAAATCCACGCCAAACTCATCAAAACAGGCCAAATTCATGACCCCCTTATATCAGCTGAGCTTCTCAAATGCTCTGCTCTATCAAACTATAGAGACCTTGACTATGCAAGGTTCTTGTTTTACCAGATCAACAACCCCAACCCCTTCTCTTACAACACCATTATTAGAGCCTTAGCTGAGAGTTATGACAAAAGTGAAAATTTTGATGATGACCCATTTGAGGCTTTAGCTATTTTCGTATCGATGTTGTGTGATGAGTTAGTTTCTCCTAACAAGTTCACTTACCCTTCTGTGCTTAAAGCTTGTGCAAAGTTGAAAACTTTGGATGTGGGCAAGCAAGTTCATGCCCAAGTGGTAAAATTTGCATTTTTTGATGATGAGTTTGTGGTTAGTAATCTAGTTAGGATGTACCTTATGTGTGGTAATATGGGTGATGCTCATTTGTTGTTTTATAAGAGGATTGAACATGGTGATGATGGATGTATGGGAAATGGAGTTATGGGTGTTGATGGGCTTAGGAAAAGGAGACAAGACGGTGATGTGGTATTGTGGAATGTTATGGTTGATGGGTACTTGAAACTTGGAGACCTGAAAGCTGCACGTGAACTGTTTGATAAAATGCCTCAAAGAAGTGTTGTTTCTTGGAATGGAATGATAGCTGGTTATGCCCAGCATGGATGTTTTAAGGATGCTGTTGAGATCTTTAGAGAAATGCAGTTGGTTGATGAGGATGTTAAACCTAGCTATGTAACATTGGTTAGTATCCTTCCCTCAGTCTCCCATTTGGGTGCACTTGAATTGGGGAAATGGATTCATTTGTATGCTGACAAAAATGGGATAGAGATTGATGATGTTCTTGGTTCTGCTTTGATTGATATGTATTCCAAGAGTGGGAGTGTTGAAAAGGCACTCCAGATCTTTGAGAGTCTCCCAAAGAAAAAAAGCACAATAACATGGAATGCTGTCATTAACGGGCTTGCTGTTCATGGGCGTGCAGATGATGCTATTCGTTATTTCTCGAGGATGCAAGATGCTGGGATCAAGCCCAGTGATGTTACTTATATAGGTCTTTTGACTGCTTGTAGCCATGGTGGAAAGGTGAGCGAAGGTAAAATGTTATTTGAGCACATGACAGAGGTTGCTGGGTTTCAGCCCAGGGTTGAACACTATGGTTGCATGGTTGATCTCCTAGGTCGAAATGGACTCTTGAATGAAGCTGAAAATTTTATATTTAACATGCCCATGAAACCCGACGATGTCATATGGAAGGCCTTGTTGGGTGCATGTAAGATGCATGAGGAGATTGAGATGGGAAGACGAGTGGCCAGACATCTTATGGAAATGGTACCCTCTGATAGTGGATCATATGTTGCTCTGTCCAATATGTATGCTTCTCTGGGAGACTGGGAGGGAGTTGCTCAGGTTAGATTGCTGATGAAGAATAGAGACATTAGAAAGGACCCTGGATGTAGTTGGATTGAGTTGGATGGTGAAATCCATGAGTTCCTTGTTGAAGATGACTCACACAAGCATGCAAAGGAGATCCATCTGATGTTGAAAGAGATTTCTGACAAATTGTGCTCTGTAGGGTACCAGCCAGATACCACACAAGTATTGCTTAATGTGGATGAAGAAGAAAAACAAAGTGCCTTGCACAACCATAGTGAGAAGATTGCAGTTGCATTTGGGTTGATTAGTACGACTCCTCAAGCACCACTTCGGGTGGTTAAGAACCTTCGAATATGCGAAGATTGTCACTCTTCAATGAAACTGATCTCGAAATTGTACAAACGGAAAATAATTGTTAGAGATAGAAAACGGTTCCATCATTTTATAAATGGATCCTGTTCTTGCAATGACTACTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_122956.p1 GENE.R_Transcript_122956~~R_Transcript_122956.p1 ORF type:complete len:663 (+),score=140.45,PPR|PF01535.16|96,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|0.0022,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|0.091,PPR|PF01535.16|0.18,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|15,PPR_2|PF13041.2|1.5e+04,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|5.2e+03,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|2.6e-07,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|6.8e-12,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|4.1e+03,DYW_deaminase|PF14432.2|1.1e-40,PPR_1|PF12854.3|9.2e+03,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|17,PPR_1|PF12854.3|0.55,PPR_3|PF13812.2|15,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|23,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|22 R_Transcript_122956:168-2156(+)
MNTYTYNPNPTINPVKPLVSPSSSTNFPEISKCQNIKNLKQIHAKLIKTGQIHDPLISAELLKCSALSNYRDLDYARFLFYQINNPNPFSYNTIIRALAESYDKSENFDDDPFEALAIFVSMLCDELVSPNKFTYPSVLKACAKLKTLDVGKQVHAQVVKFAFFDDEFVVSNLVRMYLMCGNMGDAHLLFYKRIEHGDDGCMGNGVMGVDGLRKRRQDGDVVLWNVMVDGYLKLGDLKAARELFDKMPQRSVVSWNGMIAGYAQHGCFKDAVEIFREMQLVDEDVKPSYVTLVSILPSVSHLGALELGKWIHLYADKNGIEIDDVLGSALIDMYSKSGSVEKALQIFESLPKKKSTITWNAVINGLAVHGRADDAIRYFSRMQDAGIKPSDVTYIGLLTACSHGGKVSEGKMLFEHMTEVAGFQPRVEHYGCMVDLLGRNGLLNEAENFIFNMPMKPDDVIWKALLGACKMHEEIEMGRRVARHLMEMVPSDSGSYVALSNMYASLGDWEGVAQVRLLMKNRDIRKDPGCSWIELDGEIHEFLVEDDSHKHAKEIHLMLKEISDKLCSVGYQPDTTQVLLNVDEEEKQSALHNHSEKIAVAFGLISTTPQAPLRVVKNLRICEDCHSSMKLISKLYKRKIIVRDRKRFHHFINGSCSCNDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST