Transcript Information: R_Transcript_123170.p1


Annotated TAIR IDAT3G49170.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)EMB2261
Annotation TypeOrtholog
Chromosome Positionchr3:18226954-18229600 | Reverse length=850
E-Value9.5E-286
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.78956828557308
Replicate 20.5342570080483
Replicate 30.5537252090673
Condition 2: 8 Hour
Replicate 10.43613499906035
Replicate 20.56897918170956
Replicate 31.1546826094394
Condition 3: 24 Hour
Replicate 10.99308580883198
Replicate 20.92598415189447
Replicate 31.2809598162815


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_123170.p1 GENE.R_Transcript_123170~~R_Transcript_123170.p1 ORF type:complete len:786 (+),score=124.01,PPR_2|PF13041.2|43,PPR_2|PF13041.2|0.00025,PPR_2|PF13041.2|0.0044,PPR_2|PF13041.2|2.1e-13,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.9e-11,PPR_2|PF13041.2|0.004,PPR_2|PF13041.2|4.6e-12,PPR_2|PF13041.2|0.91,PPR_2|PF13041.2|49,PPR_2|PF13041.2|15,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0093,PPR|PF01535.16|0.0003,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.18,PPR|PF01535.16|0.41,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.1e-07,PPR|PF01535.16|6,PPR|PF01535.16|0.0007,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.89,PPR|PF01535.16|0.78,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|0.71,PPR_3|PF13812.2|2.3e+02,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|9.2e-05,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|5.9,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|21,PPR_3|PF13812.2|64,PPR_3|PF13812.2|0.054,DYW_deaminase|PF14432.2|7.3e-45,PPR_1|PF12854.3|4.5e+02,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|24,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|7.6e-08,PPR_1|PF12854.3|85,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.63,TPR_19|PF14559.2|15,TPR_19|PF14559.2|2.7e+03,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|9.1,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|5.3 R_Transcript_123170:271-2628(+)
ATGAGTGCAGCCCATCGAGCACTATTTAAGGAACTCCTGAAGCTCACTCAAGAGCAAAACCTCCAAACAGGAAAAGCCCTTCACGCCAAAATCATCAAAACAGATTCTTTCTCCAATGTATACTTAGCCAACAGCATAGTCAACTTATATGCAAAATGTGGGCAACTAACCAAAGCTAAGCTTGCTTTTGACCGAATTACTCACAAAGATGACGTGTCATGGAGCTCCATTCTCAATGCATATTGTGGGTCCAAATCCTTTCACCTTGTTATGTACCTTTTTAAGCACATGAGAGCTGAGAATTGTTTACCCAATGCTCATTGTTTTGCTGGGATTTTCACTTCTGTGTCGAATTTAGGCGATGATTTGGTTGGTAAACAGGCTCATTCATTGGCAATTAAGACTGATAGATGTGGGGAAGTGGTGGTTGGTAGCTCTATTCTTAACATGTATTGCAAAACGGGTCTGTTATGCGATGCACGCCAACTGTTTGATAAAATGCCTGAGAGAAATGTGGTGGTTTGGACTTTGATGATAACAAGATGTGTGAAGATGGGTTCCCCTGAGAAGGCTATGGAACTTTTTTTGGACATGGAAGGGAGTGGGTGTGAACCGGATCGTTTCACATTTACTTGTTTGATATCTGCTTGTTCTGAGCTCGGATTGCTTTCATTTGGGAAGCAACTGCATTCTAGAGTTATACGTTCAGGGTTATCGACTGAGACTAGTGTAGGGTGTAGTTTGGTAGAGATGTATGCAAAATGTGATCATCATGACTTTCTGGCTTGTTCAAGGAGGATATTTGATAGGATTGTTGGGAATAATGTCTTGTCTTGGACTGCAATAATCACAGCATATGCCCAAAAGGGAGGACATGAAAGAGAAGCTCTCGAACTTTACATTCGTATGATTGAATGCTTGGTGGCACCTAATCATTTTACTCTAGCTAGTGTCCTGAAAGCAAGTACTAATCTCTGTGACAGACTTATTGGTGAGCAGGCTTATGGTCATGCTGTGAAACTGGGTTTTGCTTCGGATAATGTTGTGGGAAATTCTCTTATTAGTATGTATGCTCAATCAGGTAGGATGGAAGAGGCTAAGAAGGCTTTTGATGTGCTTTCTGAGAAGGACTTGGTTTCTTATAACTCGCTGTTAGATGGTTATGCTAGAAACTTGAATCTTGATGCGGCATTTGAACTCTTCCATCAAATGGAAAATATGGAGATTGGGGCAAATGCATTCACTTTCACTAGTCTATTAAGTGGAGCTGCCAGCATGGGTTCTGGTAACAAAGGGGAGCAAATACATTGTCGAATTCTGAAAGGGGGATTAATATCGAATCAACATGTTTGCAATGCATTAATTTCTATGTATTCGAGGTGTGGAAACATGGAAGCTTCATATAAAGTGTTCAGTGAGATCAGAGATTGGAATGTTGTATCATGGACATCAATGATTACAGGCTTTGCAAAACATGGATTTGCTAGAACGGCTTTGGAAATGTTCGACCAGATGATTGACGCTGGTGTAAAGCCAAATGAAGTGACCTTTGTAGCTGTCTTAACAGCTTGTAGCCATGTGGGTATGGTTTCTGAAGGGAAGAAACATTTCGACTCAATGTACAGAGTATATAGAGTTGTCCCAACCATGGAACATTATGCATGTTTAGTGGACTTGCTTGGACGATCAGGCCTTCTTTTAGAAGCACTCAAATTTATTAACTCGATGCCATTCGCAGCTAGTTCTCTTGTTTGGAGAACATTGCTTGGAGCTTGCCTTGTTCATGGAAATACCAAAATTGGGGAGCATGCTGCAAAGATGGTCATTGAGCTGGATCCAGATGATCCGGCTTCATACACCTTATTATCGAACCTGTATGCTTCTAAAGGTCAGTGGGAAGACGTGCAAAGAATCAGAACATACATGAAAGAAAAGAACTTATATAAAGAGGCTGGTTGTAGCTGGATTGAAGCTGAAAATGGTGTGCACAAGTTTTTCGTAGGAGATACATCACACGCTCAAACGCAAGCAATATATAAGAAACTGGATGAATTGATTAATGAAATCAGGGGAATGGGTTATCACCCTAATACAGATTTTGTTCTTCATGACTTGGAGGAAGAGCAAAAGGAGCAGTACTTGTTGCAGCACAGTGAAAAGATAGCCATAGCGTATGGTCTCATTAGCACACCTAGGCCGAAACCAATAAGAATTTTCAAGAACCTTCGGATTTGTGGGGATTGTCATACAGCTATGAAGTTCATCTCAAAGGCAAGCGGAAGAGATATTGTCGTTAGGGATTCAAAGCGATTTCATCACTTCAGAGATGGTTCTTGTTCCTGTAATGACTACTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_123170.p1 GENE.R_Transcript_123170~~R_Transcript_123170.p1 ORF type:complete len:786 (+),score=124.01,PPR_2|PF13041.2|43,PPR_2|PF13041.2|0.00025,PPR_2|PF13041.2|0.0044,PPR_2|PF13041.2|2.1e-13,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.9e-11,PPR_2|PF13041.2|0.004,PPR_2|PF13041.2|4.6e-12,PPR_2|PF13041.2|0.91,PPR_2|PF13041.2|49,PPR_2|PF13041.2|15,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0093,PPR|PF01535.16|0.0003,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.18,PPR|PF01535.16|0.41,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.1e-07,PPR|PF01535.16|6,PPR|PF01535.16|0.0007,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.89,PPR|PF01535.16|0.78,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|0.71,PPR_3|PF13812.2|2.3e+02,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|9.2e-05,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|5.9,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|21,PPR_3|PF13812.2|64,PPR_3|PF13812.2|0.054,DYW_deaminase|PF14432.2|7.3e-45,PPR_1|PF12854.3|4.5e+02,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|24,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|7.6e-08,PPR_1|PF12854.3|85,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.63,TPR_19|PF14559.2|15,TPR_19|PF14559.2|2.7e+03,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|9.1,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|5.3 R_Transcript_123170:271-2628(+)
MSAAHRALFKELLKLTQEQNLQTGKALHAKIIKTDSFSNVYLANSIVNLYAKCGQLTKAKLAFDRITHKDDVSWSSILNAYCGSKSFHLVMYLFKHMRAENCLPNAHCFAGIFTSVSNLGDDLVGKQAHSLAIKTDRCGEVVVGSSILNMYCKTGLLCDARQLFDKMPERNVVVWTLMITRCVKMGSPEKAMELFLDMEGSGCEPDRFTFTCLISACSELGLLSFGKQLHSRVIRSGLSTETSVGCSLVEMYAKCDHHDFLACSRRIFDRIVGNNVLSWTAIITAYAQKGGHEREALELYIRMIECLVAPNHFTLASVLKASTNLCDRLIGEQAYGHAVKLGFASDNVVGNSLISMYAQSGRMEEAKKAFDVLSEKDLVSYNSLLDGYARNLNLDAAFELFHQMENMEIGANAFTFTSLLSGAASMGSGNKGEQIHCRILKGGLISNQHVCNALISMYSRCGNMEASYKVFSEIRDWNVVSWTSMITGFAKHGFARTALEMFDQMIDAGVKPNEVTFVAVLTACSHVGMVSEGKKHFDSMYRVYRVVPTMEHYACLVDLLGRSGLLLEALKFINSMPFAASSLVWRTLLGACLVHGNTKIGEHAAKMVIELDPDDPASYTLLSNLYASKGQWEDVQRIRTYMKEKNLYKEAGCSWIEAENGVHKFFVGDTSHAQTQAIYKKLDELINEIRGMGYHPNTDFVLHDLEEEQKEQYLLQHSEKIAIAYGLISTPRPKPIRIFKNLRICGDCHTAMKFISKASGRDIVVRDSKRFHHFRDGSCSCNDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST