Transcript Information: R_Transcript_123177.p1


Annotated TAIR IDAT1G59720.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)CRR28
Annotation TypeOrtholog
Chromosome Positionchr1:21939868-21941784 | Reverse length=638
E-Value2.1E-283
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5645395104045
Replicate 20.59989429760852
Replicate 31.2704577154169
Condition 2: 8 Hour
Replicate 10.49383257036461
Replicate 20.48855708224439
Replicate 31.0677418011992
Condition 3: 24 Hour
Replicate 11.4662128985761
Replicate 21.1490975220301
Replicate 30.99322357402727


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_123177.p1 GENE.R_Transcript_123177~~R_Transcript_123177.p1 ORF type:complete len:595 (+),score=101.62,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.093,PPR_2|PF13041.2|3.7,DYW_deaminase|PF14432.2|3.7e-36,PPR|PF01535.16|20,PPR|PF01535.16|95,PPR|PF01535.16|0.015,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.00036,PPR|PF01535.16|0.48,PPR|PF01535.16|0.069,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.16,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|4.9e+03,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|59,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|6.7e+02 R_Transcript_123177:142-1926(+)
ATGCTCCTAGCTTCAACAACCACATGTCACCAACCCAACCTTCTCACTTACCTCAACCAATGTTCCTCCATGACCCAATTAAAGCAAATCCATGCCCAAGTAATCCGTACAACCCTAACCCACAACCCAAAAGACCTCCTTTTTCTTCACAGTAGACTTCTCCATTACACCTCCTTCATTGACATTGACTATTCCTTCAAAATTTTCAACCAAATTCATAACCCCAACTCATTTATATGGAATACCCTCATAAGAGCTTGTGCTAGTAGCCCTTCTCACCATAAATCCCTTGCCTTTAAACTCTTTCATGACATGTTGTGCGAGGGTTTTGTTCAACTTGATAAACACACCTTCCCTTTTGTTCTCAAAGCTTGTGCTTACCTTTTTGCTGAAGATGAAGGGAAACAGGCTCATTCATATGCTGTGAAACTTGGGTTTGGTTCTGATGTTTATGTTAATAACAGTCTCATCCATTTTTATGGGTCCTGTGGGTATTTGGTTTGTGCACAGAAAGTGTTTGATAAAATGCCTGAGAGAAGTGTTGTGTCATGGAATGTTATGATTGATGTGTTGGTTCAGTTGGGGGAGCTTGATAGGGCTTTAGAATTGTTTGGGCTGATGCAGGGTTTGTTTGAGCCAGATGGGTATAGTTTACAGAGTGTTTTATCTGCTTGTGCTGGACTTGGTGCTTTGGGCTCTGGTATGTGGGCTCATGCTTATATTTTGAGAGTTTGTGATGTTAATTTGCAAAGTGATGTTTTGGTGAACAACTCATTGGTGGAAATGTATTGTAAATGTGGGATGTTAAGTTTGGCTAAGCAGGTCTTTGATGGGATGATTAAGCGCGACGTTAATTCGTGGAATTCGATGATTTTAGGACTAGCTATGCATGGCCATGTTGAGTTGGCAATGGAACATTTTGATCATATGACCAAGGTGGATGGGCTGAGGCCGAATTCCATCACTTTTGTTGGCATTTTGAGTGCTTGCAACCACAGGGGTATGGTTGAATTGGGCCGTGAGTACTTTGATAAGATGGTGAAGGATTATGGAATTGAACCTCGGCTGGAACATTTTGGGTGTATGGTTGATCTTCTTGCTTGTGCGGGATTGGTTGACGAGGCATTAGAACTTGTGTCAAATATGCCTATGAAACCTGATGTCGTGATATGGAGAAGTCTTCTTGATGCTTGCTGTAAGAAAAATGCAGGCATAGAACTAAGTGAAGAAGTAGCAAAGAAGATCCTTGAATCAGAAGCTACCTGTAGTGGTGTTTATGTGCTTCTCTCCAGAGTTTACGCCTCAGCTGCTCGATGGAATGATGTCGGATCAATAAGGAAGTTGATGACTGACAAAGGCATAACTAAAGAACCTGGTTGCAGTTCCTTGGAAATCAATGGAGTCAACCATGAGTTCTTTGCAGGGGACACATCTCACCCTCAAACAAAGGACATTTACCGAGTTTTGGATTTGATAAACGAGAGGCTTCTCTCGGAGGGATATCAGCCTGACCTTTCACAGGCACCCTTAGTTGACGATGAAGATGAGGACCGAAAGCAAGATGCTCTCAGGCTGCATAGTGAGCGACTAGCAATTGCTTTCGGACTTCTACATGTGAAACCAGGCGAACCAATTCGCATATTCAAAAACCTTCGTGTCTGCAGTGACTGCCATGAAGTCACCAAACTGATCTCTAGAATCTTCAATGTTGAGATCATTGTAAGAGATCGAACTCGATTCCATCATTTCAAAGATGGACAGTGTTCATGCTCAGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_123177.p1 GENE.R_Transcript_123177~~R_Transcript_123177.p1 ORF type:complete len:595 (+),score=101.62,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.093,PPR_2|PF13041.2|3.7,DYW_deaminase|PF14432.2|3.7e-36,PPR|PF01535.16|20,PPR|PF01535.16|95,PPR|PF01535.16|0.015,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.00036,PPR|PF01535.16|0.48,PPR|PF01535.16|0.069,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|39,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|0.16,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|4.9e+03,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|59,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|6.7e+02 R_Transcript_123177:142-1926(+)
MLLASTTTCHQPNLLTYLNQCSSMTQLKQIHAQVIRTTLTHNPKDLLFLHSRLLHYTSFIDIDYSFKIFNQIHNPNSFIWNTLIRACASSPSHHKSLAFKLFHDMLCEGFVQLDKHTFPFVLKACAYLFAEDEGKQAHSYAVKLGFGSDVYVNNSLIHFYGSCGYLVCAQKVFDKMPERSVVSWNVMIDVLVQLGELDRALELFGLMQGLFEPDGYSLQSVLSACAGLGALGSGMWAHAYILRVCDVNLQSDVLVNNSLVEMYCKCGMLSLAKQVFDGMIKRDVNSWNSMILGLAMHGHVELAMEHFDHMTKVDGLRPNSITFVGILSACNHRGMVELGREYFDKMVKDYGIEPRLEHFGCMVDLLACAGLVDEALELVSNMPMKPDVVIWRSLLDACCKKNAGIELSEEVAKKILESEATCSGVYVLLSRVYASAARWNDVGSIRKLMTDKGITKEPGCSSLEINGVNHEFFAGDTSHPQTKDIYRVLDLINERLLSEGYQPDLSQAPLVDDEDEDRKQDALRLHSERLAIAFGLLHVKPGEPIRIFKNLRVCSDCHEVTKLISRIFNVEIIVRDRTRFHHFKDGQCSCSDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST