Transcript Information: R_Transcript_123216.p1


Annotated TAIR IDAT4G02460.1
Annotated Gene NameDNA mismatch repair protein, putative
Annotated Gene Symbol(s)PMS1
Annotation TypeOrtholog
Chromosome Positionchr4:1076306-1080510 | Reverse length=923
E-Value1.4E-199
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4518902774995
Replicate 20.73121444235864
Replicate 30.83573503667555
Condition 2: 8 Hour
Replicate 10.8121348241209
Replicate 20.70457173297268
Replicate 31.7760282364889
Condition 3: 24 Hour
Replicate 11.9036324401081
Replicate 21.6824907279711
Replicate 31.9600929570356


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_123216.p1 GENE.R_Transcript_123216~~R_Transcript_123216.p1 ORF type:complete len:603 (+),score=107.44,DNA_mis_repair|PF01119.15|1.1e+03,DNA_mis_repair|PF01119.15|8.7e-24,HATPase_c_3|PF13589.2|3.6e-15,HATPase_c|PF02518.22|4e-09 R_Transcript_123216:413-2221(+)
ATGGCTTCCACACCAACAATCAAGCCCATAAACAAGGGGGTAGTCCACAAAATATGTGCAGGGCAAGTCATTTTGGACCTTTCATCTGCCATCAAAGAGCTCGTCGAAAACAGCTTAGACGCTGGAGCCACTTCCATTGAGATTGCTCTCAACAATTACGGGGAAGATTGGTTCCAAGTCATCGATAATGGCTCCGGTATTTCTCCTTCCAATTTCAAGGTTCTTGCCCTTAAGCATCATACTTCCAAATTGGCAGATTTCCCTGACCTGCAGTCCCTTACCACATTTGGCTTCAGAGGAGAGGCACTTAGCTCCCTTTGTGCACTGGGGAATTTGACTGTGGAAACTAGGACGAAGAATGAGTCTGTTGCCACCCACTTAACTTTTGACCATTCTGGACTTTTAGTAGCTGAGAAGAAGACAGCGAGAAAAGTCGGCACCACTGTAACAGTCAAGAAACTGTTCTCGAACTTGCCAGTGCGGAGCAAAGAATTCAGTCGTAATATCCGCAAGGAATATGGGAGACTTATTTCTTTATTAAATGCCTATGCTCTCATTACTAAAGGAGTTCGATTAGTGTGCACCAATATGTCTGGGAAAAATCCAAGATCTGTGGTTCTAAAAACGCAAGGAAGTGGATCACTTAAAGATAACATCATAGCTCTATTTGGGATGAACACTTTTACTTGCTTGGAGCCTCTGAGTATCTCTATGTCAGAAAACTGCCAAGTTGAGGGGTTCGTCTCGAAATCTGGTCATGGAAGTGGGCGAAATTTGGGTGATAGACAATTCTTTTATGTAAATGGTCGTCCAGTTGATATGCCAAAAGCTGGCAAACTTGTGAATGAATTATACAGAGGCGCAAATTCACGCCAATATCCCATTGCAATCCTGAACTTTATTGTTCCATGTATGGCATATGATGTCAATGTGACGCCTGATAAAAGAAAGATATTTTTCTCAAATGAAGGCTCTATTCTGCAATCTTTAAGAGAAGCTCTAGGAATGATCTACTCAGCGGATTATGTCAGTTATAGTGTTGAAAATCTAGAGGGACCTGGAAACGAAGATGATAGCTCCTCTTCACTGCCTGTGCAATCACAGTCGCTATCTGAACAGCTGTCTCCCAAAAGAACTCAACTTAGCAGATTATGTGATGAGAAACGGGCTACAGAGGATATAATGATTATAGATTCAACAGAAACAGACAGCCATAATTCATCTTCCTTGGAAGTTTTCCAGAACAATTCTGAGAAGTCACTCATCAAGGATTTCAGGCTCAAGGTTCACAATATTAAGACAAACTATAGTTTTTCAGGTAGCCATGAGAACAAATTGACAAGTAGCATTAATAATGAGGAACAAAACCTCACAGAAGCGAAAAAGGACACTGCAGTTAATAAGCCTAACAAGTTTGGTCCTGTTCAGTCATCACTTGCCAAGTTTGTCACTGTGCAAAAGCGGAAGCTTGAAAGTATATCAAAACCCTTATCTGAAGTTCCTGTCTTGAGAAATGACTCTGCTCATTGTAATCCAGTAAACCGTGATTCTGAATTGCATGTTGCTGCTTCAAGCTCAGCCCCTAAGCTCCAGTGTGCTTATGACTCTGCGGGATTTCCTGAGAACGAACCATCAAAGCATTTGAAAACTGATGAAGTTTATGGTCAAGCAAGTACTCCTGTACTAAATGATAATGATACTTGTGTGGAAGTGTCAGGACAGGATATGGAACTTCAAGAGATTAGAATGCCTCTCGAAGAGGTGGTGATTCCAAGTAGTGCATGTAGAGGAGATATAGGAAATAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_123216.p1 GENE.R_Transcript_123216~~R_Transcript_123216.p1 ORF type:complete len:603 (+),score=107.44,DNA_mis_repair|PF01119.15|1.1e+03,DNA_mis_repair|PF01119.15|8.7e-24,HATPase_c_3|PF13589.2|3.6e-15,HATPase_c|PF02518.22|4e-09 R_Transcript_123216:413-2221(+)
MASTPTIKPINKGVVHKICAGQVILDLSSAIKELVENSLDAGATSIEIALNNYGEDWFQVIDNGSGISPSNFKVLALKHHTSKLADFPDLQSLTTFGFRGEALSSLCALGNLTVETRTKNESVATHLTFDHSGLLVAEKKTARKVGTTVTVKKLFSNLPVRSKEFSRNIRKEYGRLISLLNAYALITKGVRLVCTNMSGKNPRSVVLKTQGSGSLKDNIIALFGMNTFTCLEPLSISMSENCQVEGFVSKSGHGSGRNLGDRQFFYVNGRPVDMPKAGKLVNELYRGANSRQYPIAILNFIVPCMAYDVNVTPDKRKIFFSNEGSILQSLREALGMIYSADYVSYSVENLEGPGNEDDSSSSLPVQSQSLSEQLSPKRTQLSRLCDEKRATEDIMIIDSTETDSHNSSSLEVFQNNSEKSLIKDFRLKVHNIKTNYSFSGSHENKLTSSINNEEQNLTEAKKDTAVNKPNKFGPVQSSLAKFVTVQKRKLESISKPLSEVPVLRNDSAHCNPVNRDSELHVAASSSAPKLQCAYDSAGFPENEPSKHLKTDEVYGQASTPVLNDNDTCVEVSGQDMELQEIRMPLEEVVIPSSACRGDIGNN*

Click here to download the sequence:
Link to NCBI Protein BLAST