Transcript Information: R_Transcript_12375.p1


Annotated TAIR IDAT5G16620.1
Annotated Gene Namehydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)PDE120, TIC40, ATTIC40
Annotation TypeOrtholog
Chromosome Positionchr5:5450808-5454256 | Forward length=447
E-Value1.9E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.281641171609
Replicate 212.639772850611
Replicate 315.943089366922
Condition 2: 8 Hour
Replicate 114.740490698242
Replicate 214.310964378359
Replicate 319.059191151406
Condition 3: 24 Hour
Replicate 116.621452432858
Replicate 214.644691903343
Replicate 318.123019480751


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12375.p1 GENE.R_Transcript_12375~~R_Transcript_12375.p1 ORF type:complete len:500 (+),score=130.73,RPN13_C|PF16550.1|6e-06 R_Transcript_12375:157-1656(+)
ATGGAAAGTAATTTATCCTTAGTTTCTCCAAAACCAGTACTGGGTTTAACCCAATCACCTAAACCCACAACCTTTTCCAGCAGCAAACAACTCTTTGGTATCCCTCTCCTCTCAAGAAAATCAACTGGGTCACTCTCATCTTCAACAAAACCCAGATCAAGAACCGTTGCTTTTACTTTTAGAGGCCCAAGAAAACCTGTTCTTGAGAATGACGAGAATGGAAAAAGACTTGATGTATTTGCAAGTACTTCTAATAGCCGTACTACTACTCAGGAGACTACTTCAGTTGGCGTTAATCCTCCTCAGCCTTATCTTCCTCCTCCTCCTCCTCCTTCCCAGTTTGGGTCGCCTTTGTTTTGGATTGGAGTTGGTGTTGGCTTTTCTGCCCTCTTTTCTTTTTTGTCTGCCAGGGTTAAGGATTATGCAAGGCAACAAACTTTTAAGTTTTTGATGAACCAGGCTCCAAACAATCAATTTAGTAATGGACCCTTTTCTCCTGGTTCACCTTTCGGTTTCCCATCGCCATCTGCATCAGGACCAGGTGGTTCTGCTGGTTTTCCCTTCCAACAACCATCTACATCAGGACAAGGTGGTTCTGCTAGTTTTCCTTTCCAGCAACCATCAACATCAGGACCAAGTACTTCTGCTGGCCCCCCCTACCCATCACCAGCTACATCAGGACCAAGTACCGTCACTGGTTCCACTTGGGCGCCATCTTCAGCTTCTTCTTCTGGGCCAAATCAAGCCACTTCTTCCTCTCCTGCTGCTTCTGGAGCTGCAGTAGATGTTTCTGCGACCGAAGTTGAACCTGCAGAACCCAGGGTTGTCAAAGATGAAACTGATGTAAAGACTGAAGCAAAACGACCTGCTTTTGTGGATGTCTCTCCTGAAGAAACTTTTCAAAAGAGTCCTTTTGAAGACTCTAGTGATTCGTCTTCACAAAAGCCTTCCATGGATGCTAAGTTTGCTGAGGTAGTACAAAATGGAGCTGCTTCAAAGGAGGCTTCAACTTCAAATGAAGGAAAGAAAGGTTCTGGGTTGGATGTCGAAGCATTGGAGAAACTGCTTGAAGATCCAACCATGCGCGAGATGATCTATCCACATCTGCCTGAGGAGATGAGAAATCCAGAAACCATGAAATGGATGCTACAAAATCCACTATATCGTCAACAGCTACAAGACATGTTGGACAACATGACTGGAGGCAGTGAATGGAACAACAAAATGATGGAAACACTAAAAGATTTTAACTTCGATAACCCTGAAGTAAAGCAACAATTCGATCAACTTGGTCTCACACCTCAAGAGGTTGTTTCTAAAATTATGGCCAATCCTGATGTTGCAATGGCATTCCAAAACCCCAGAGTTCAGCAAGCCATAATGGAGTGCTCACAGAATCCTATGAATATGGTCAAGTATCAAAATGATCAGGAGGTTATGGCCGTTTTCAATAAAATATCGCATCTTTTCTTTGGATCAGCCGGTCCAGGTGGATTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12375.p1 GENE.R_Transcript_12375~~R_Transcript_12375.p1 ORF type:complete len:500 (+),score=130.73,RPN13_C|PF16550.1|6e-06 R_Transcript_12375:157-1656(+)
MESNLSLVSPKPVLGLTQSPKPTTFSSSKQLFGIPLLSRKSTGSLSSSTKPRSRTVAFTFRGPRKPVLENDENGKRLDVFASTSNSRTTTQETTSVGVNPPQPYLPPPPPPSQFGSPLFWIGVGVGFSALFSFLSARVKDYARQQTFKFLMNQAPNNQFSNGPFSPGSPFGFPSPSASGPGGSAGFPFQQPSTSGQGGSASFPFQQPSTSGPSTSAGPPYPSPATSGPSTVTGSTWAPSSASSSGPNQATSSSPAASGAAVDVSATEVEPAEPRVVKDETDVKTEAKRPAFVDVSPEETFQKSPFEDSSDSSSQKPSMDAKFAEVVQNGAASKEASTSNEGKKGSGLDVEALEKLLEDPTMREMIYPHLPEEMRNPETMKWMLQNPLYRQQLQDMLDNMTGGSEWNNKMMETLKDFNFDNPEVKQQFDQLGLTPQEVVSKIMANPDVAMAFQNPRVQQAIMECSQNPMNMVKYQNDQEVMAVFNKISHLFFGSAGPGGF*

Click here to download the sequence:
Link to NCBI Protein BLAST