Transcript Information: R_Transcript_123930.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value1E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5139390073255
Replicate 23.0315513970056
Replicate 34.1648613811186
Condition 2: 8 Hour
Replicate 11.0475236341067
Replicate 23.3481534307658
Replicate 34.5621695142149
Condition 3: 24 Hour
Replicate 11.4732282712965
Replicate 22.2409086573314
Replicate 35.0330016124951


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_123930.p1 GENE.R_Transcript_123930~~R_Transcript_123930.p1 ORF type:5prime_partial len:187 (+),score=18.17,SEO_C|PF14577.2|1.4e-31 R_Transcript_123930:1-561(+)
AACACAGAAGTAGATGTCAGCCTGCTTTTCGACTTCGTCCAGCATGTTTTCCGACTTCCTATAGGAGGACAAAAGGATAGGGAGACCGCGAGTCGGAATGCAAAGAGAATGCTCGAATGTTTACATAAGATGGGACAAGGGAAATACATTTGCTTGTATGGAGGTGAAGACATGGATTGGATTCGTAAATTTACAGCAAACGCCAAGAAAGTTGCTACCTTTGCAACGATAGAGCTGGAGCTAGTTTATGTTGGGAAGAGCTTGAAAACCAGAGAGACCATAGAAAAGGAGAAACTCAGCCACTCATGGCTTGACTTCACTTGGAGCTGGTATTTCTGGACTAGGCTCGAGTGCTTGTTATACTCAAGAATGCAATATTTATCAGAAAACAATAATGAAGATCAGAGCTGTGACTATGAGTATGTTTGGCCTAATTTCTTTCAAAAACAGTTTTTATTTCTCATTTTCCTCCTCTCCCTTCTCCTCTTTCACATTCCCTTTTTCTTCCCTACTCCTCCTTCACTTTCTCCCCCAATTTTAGTTTCTAGTAAACTCAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_123930.p1 GENE.R_Transcript_123930~~R_Transcript_123930.p1 ORF type:5prime_partial len:187 (+),score=18.17,SEO_C|PF14577.2|1.4e-31 R_Transcript_123930:1-561(+)
NTEVDVSLLFDFVQHVFRLPIGGQKDRETASRNAKRMLECLHKMGQGKYICLYGGEDMDWIRKFTANAKKVATFATIELELVYVGKSLKTRETIEKEKLSHSWLDFTWSWYFWTRLECLLYSRMQYLSENNNEDQSCDYEYVWPNFFQKQFLFLIFLLSLLLFHIPFFFPTPPSLSPPILVSSKLK*

Click here to download the sequence:
Link to NCBI Protein BLAST