Transcript Information: R_Transcript_12409.p1


Annotated TAIR IDAT5G26742.2
Annotated Gene NameDEAD box RNA helicase (RH3)
Annotated Gene Symbol(s)emb1138
Annotation TypeOrtholog
Chromosome Positionchr5:9285540-9288871 | Reverse length=748
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 136.505921909437
Replicate 218.806502213371
Replicate 328.612342175317
Condition 2: 8 Hour
Replicate 134.821003035408
Replicate 234.542761028285
Replicate 336.013686347443
Condition 3: 24 Hour
Replicate 131.859239232556
Replicate 222.082320557928
Replicate 328.494300212022


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12409.p1 GENE.R_Transcript_12409~~R_Transcript_12409.p1 ORF type:complete len:815 (+),score=203.95,DEAD|PF00270.25|5.6e-48,Helicase_C|PF00271.27|5.1e+02,Helicase_C|PF00271.27|5.5e-30,GUCT|PF08152.8|3.8e-19,zf-CCHC|PF00098.19|9.8e-07,ResIII|PF04851.11|4.5e-06 R_Transcript_12409:153-2447(+)
ATGTCATCTTCTATAATTGGGGTTTCATCCATATACCAGTCACCTGCCCTTCCAAAAATACCCAGAAAATACCCAGTTCCTCCATCTCTACTTTCTCTTCCATTCTTCTCAGAGAAAACCCGCTTAAACTCACTTAAAGTTAGAAACTTGAAGTGGGTTTCTTCTGCTATTGCTACACCTAACTCTGTGTTGAGTGAGGAGGCTTTTAAGGGCCTTTCTGAGGACTTCTCTAAGGGCTCGTTTGGTGTTAGTGATGAGGAATTTGATGAGGAGTTTGATGAAGATGAGTTTGAGAGTGAGGGTGATGGTGAAAATATTCAAGGGGACTCTGTGGTTAGTAAAGATGAGCTTGATGTTGAAAGGTTGGGACTTCCTCAGAAACTTGCTGCTGCTCTTACCAAACGGGGCATTACCCAGCTTTTCCCCATTCAGCGAGCTGTACTGGTTCCTGCTTTGGAAGGCCGAGATATCATTGCTCGAGCAAAGACAGGGACTGGAAAAACTTTAGCTTTTGGGATTCCCATACTCAAGCGAATTACAGAAGCAGATGAAGAGAGAAGTCCTCGAAGGCGGTCAGGACGGCTTCCAAGAGTATTAGTCCTAGCTCCTACTAGAGAGTTGGCAAAACAAGTGGAGAAAGAAATGAAGGAGTCTGCACCATACTTGAACACCGTTTGTGTGTATGGAGGTGTTTCTTACACTGCACAACAAGGTGCACTTTCTCGTGGAGTTGATGTGGTGGTAGGAACTCCTGGTAGACTTATTGACCTGGTCAATAGTAACAGCCTCAAATTGAGTGAGGTTGAATTTTTGGTCCTTGATGAAGCGGACCAAATGCTTGCAGTTGGATTTGAGGAAGATGTGGAAGTGATCTTGGAAAAACTTCCATCCGAGAGGCAGAGCATGCTTTTCTCGGCTACTATGCCTGGTTGGGTAAAGAAATTAGCTAGGAAATATTTGGACAATCCCCTCACGATTGATTTGGTTGGTGATCAGGACGAGAAGTTAGCGGAAGGGATTAAATTATTTGCAGTTTCAACTACCGCTAATTCAAAACGCACTATTCTTAGTGACATTATCACGGTGTATGCAAAGGGTGGGAAAACCATAGTTTTCACGCAGACAAAACGTGATGCTGATGAAGTCTCTTTAGCATTAACAAACAGCATTACTTCAGAGGCATTGCATGGAGATATATCCCAACACCAGAGGGAGAGGACACTAAATGGTTTCCGACAAGGGAAATTCTCTGTGCTTGTTGCCACAGATGTTGCTTCTCGTGGTCTTGATATACCTAATGTTGACCTGGTTATTCATTATGAGCTACCAAATGATCCAGAGACTTTTGTGCATCGTTCTGGTCGTACAGGGCGTGCAGGGAAGGCAGGCACTGCTGTCTTAATGTTCTCTAGCAACCAGAGAAGAACAGTTCGATCCCTTGAAAGAGATGTCGGTTGCAAGTTTGAGTACTCAAGTCCCCCGACAGTTGAAGAGGTCTTGGAGGCATCTGCTGATCAAGTTGTTGCTACTCTTGGTGGGGTTCATCCCGAGTCCATTGCGTTCTTTACTCCAACTGCCCAGAGATTATTTGAAGAGAAGGGAACAGAAGCTCTTGCAGCTGCATTAGCACAGATGAGTGGTTTCTCTCAGCCACCATCATCAAGATCTCTTCTTAGTCATGAACAGGGTTGGGTAACGGTGCAATTAACTCGTGCTCCTGGTTATTCAAGAGGATTCTTGTCTGCTAGATCTGTTATGGGATTCCTTTCTGACGTTTATCCTACAGCAGCGGATGAAGTTGGAAAAATACAATTGATTGCAGATGAGAGGGTCCAAGGTGCTGTGTTTGATCTTCCTGAAGAAATTGCGAAGGAGCTATTAAGCAAAGAAATACCAGAAGGAAACGCTCTATCCAGGATCACTAAGTTGCCTGCTCTGCAAGATGATGCTCCTCCAAGTGACATGTATGGTAGATTTTCTGGTAGGGATAGAGGTTCCCGTGGAGGTTCAAGGGACAGAAGAGGAGCACGAACTTCCCGTGGTTGGGGTAGGGGTCAGGGCTCTGATTTCGATGACGATGATGACTTATTTAGGCGTGGTGGTCGAAGCCCTAGATCTGGTAGCAGGTGGTCCTCTAACTCAAGAAGCAGTGGCGATGATTGGCTGATCAGTGGTAGACGATCAAATAGGTCATCATCATTAGGAAGCAGAGACAGGAACTTTGTTGGTGCGTGCTTCAACTGTGGAAGAACTGGGCATAGGGCATCAGAATGCCCAAGCAAGCAATCTTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12409.p1 GENE.R_Transcript_12409~~R_Transcript_12409.p1 ORF type:complete len:815 (+),score=203.95,DEAD|PF00270.25|5.6e-48,Helicase_C|PF00271.27|5.1e+02,Helicase_C|PF00271.27|5.5e-30,GUCT|PF08152.8|3.8e-19,zf-CCHC|PF00098.19|9.8e-07,ResIII|PF04851.11|4.5e-06 R_Transcript_12409:153-2447(+)
MSSSIIGVSSIYQSPALPKIPRKYPVPPSLLSLPFFSEKTRLNSLKVRNLKWVSSAIATPNSVLSEEAFKGLSEDFSKGSFGVSDEEFDEEFDEDEFESEGDGENIQGDSVVSKDELDVERLGLPQKLAAALTKRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKRITEADEERSPRRRSGRLPRVLVLAPTRELAKQVEKEMKESAPYLNTVCVYGGVSYTAQQGALSRGVDVVVGTPGRLIDLVNSNSLKLSEVEFLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLFAVSTTANSKRTILSDIITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKAGTAVLMFSSNQRRTVRSLERDVGCKFEYSSPPTVEEVLEASADQVVATLGGVHPESIAFFTPTAQRLFEEKGTEALAAALAQMSGFSQPPSSRSLLSHEQGWVTVQLTRAPGYSRGFLSARSVMGFLSDVYPTAADEVGKIQLIADERVQGAVFDLPEEIAKELLSKEIPEGNALSRITKLPALQDDAPPSDMYGRFSGRDRGSRGGSRDRRGARTSRGWGRGQGSDFDDDDDLFRRGGRSPRSGSRWSSNSRSSGDDWLISGRRSNRSSSLGSRDRNFVGACFNCGRTGHRASECPSKQSF*

Click here to download the sequence:
Link to NCBI Protein BLAST