Transcript Information: R_Transcript_124528.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value1.6E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.839758457115
Replicate 211.72766329559
Replicate 312.794754332986
Condition 2: 8 Hour
Replicate 19.4855152498337
Replicate 214.504355788877
Replicate 38.5034572275687
Condition 3: 24 Hour
Replicate 110.548181699215
Replicate 212.120457588515
Replicate 314.591803124598


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_124528.p1 GENE.R_Transcript_124528~~R_Transcript_124528.p1 ORF type:5prime_partial len:111 (-),score=32.63 R_Transcript_124528:73-405(-)
GCTGAAACAGCTGAGAAAGAACGTGTGGTAGAAGAAGGTGCCCTCAAGACAGAGGAAAATAGTGGCAAGAGAGTTAGGTTTTCAATGAAGAATAATCTCATTTGGAAGCCACATAGTCCCTTGCCTCCACAGAGTTTGAGAATACCTCCATCTGTTACACCTAGGGGCAGCGCTCTTAAGCCAGGTGTATCTCCTGGACCTATCAGAGACACATCGAAAGACACCAAGAAAGCAAAGAAGAAGAAGGCTAGTCCTATGAAGAAAGCCAGAAAAGTGAAGACCATATCTCCTGCAGTTAAACGTGTGAAGAAGGTTAAGCAGATGTCTGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_124528.p1 GENE.R_Transcript_124528~~R_Transcript_124528.p1 ORF type:5prime_partial len:111 (-),score=32.63 R_Transcript_124528:73-405(-)
AETAEKERVVEEGALKTEENSGKRVRFSMKNNLIWKPHSPLPPQSLRIPPSVTPRGSALKPGVSPGPIRDTSKDTKKAKKKKASPMKKARKVKTISPAVKRVKKVKQMSA*

Click here to download the sequence:
Link to NCBI Protein BLAST