Transcript Information: R_Transcript_124548.p1


Annotated TAIR IDAT2G19280.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:8362672-8364753 | Forward length=693
E-Value1.9E-190
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4280410419766
Replicate 20.26880043207209
Replicate 30.74943807213586
Condition 2: 8 Hour
Replicate 10.66178013370933
Replicate 20.85881054013088
Replicate 31.5233926409713
Condition 3: 24 Hour
Replicate 11.2409625528489
Replicate 20.9411917023006
Replicate 31.5567357529799


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_124548.p1 GENE.R_Transcript_124548~~R_Transcript_124548.p1 ORF type:complete len:703 (+),score=98.97,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|22,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|1.5e-10,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|1.2e-13,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|9e-15,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|1.4e-09,PPR_2|PF13041.2|2.5e-14,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|2.2e-05,PPR_1|PF12854.3|9.8e-08,PPR_1|PF12854.3|4.8e-11,PPR_1|PF12854.3|2e-09,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|1.3e-11,PPR_1|PF12854.3|5.3e-10,PPR_1|PF12854.3|0.26,PPR|PF01535.16|0.18,PPR|PF01535.16|61,PPR|PF01535.16|0.034,PPR|PF01535.16|0.00082,PPR|PF01535.16|0.037,PPR|PF01535.16|0.00038,PPR|PF01535.16|2e-07,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.0009,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|1.1e+03,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|70,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|5.3e+02,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.00081,PPR_3|PF13812.2|4.8e+03,ATP13|PF12921.3|2.5e+03,ATP13|PF12921.3|0.012,ATP13|PF12921.3|6,ATP13|PF12921.3|18,ATP13|PF12921.3|7.1e+02,ATP13|PF12921.3|1.1e+03,ATP13|PF12921.3|3.3e+02,ATP13|PF12921.3|3.6e+03,ECSIT|PF06239.7|5e+03,ECSIT|PF06239.7|5,ECSIT|PF06239.7|3.3e+03,ECSIT|PF06239.7|3.6e+02,ECSIT|PF06239.7|1.4,ECSIT|PF06239.7|3.4,AEP1|PF17049.1|29,AEP1|PF17049.1|1.1e+02,AEP1|PF17049.1|2.2,AEP1|PF17049.1|2.9e+02,AEP1|PF17049.1|1.1e+03,AEP1|PF17049.1|5.9 R_Transcript_124548:176-2284(+)
ATGAAGGGCAAGTTTTCATTGATAAATGGGTTCACTGTTGGTTTTAATGTGGTGTTAAAGAGAAACAACTTAAGTAGGTATTTCTATTCTGTCAATTCTGCATTGCCTGCCTTACATTCTTCTGAGGATGAAACTCCATTTCTTGATGATGTCAATAGTTCATATTGTGTTTCAGTCGAACGGATTAGCAGACCATGTGTGGGTAATAGATATGTCACCAATGAGTCTAGGTTTCTTAGCTCTTCAGCAATGAAGAATTGGGGACGGTACAGTGATGGGATGGGAATGATTATGTCAATACTTGTAAAGCAAGGATGGAGGTTGAATGATCTGGGTTGTAGTTGTTGTGGTGTTGAGTTACATGAGGAACATGTAGTCGCTGCTCTTAATGGCGTGTTCGTTGAAACGGGAAGTGCTGAACTCGCCTTGCGTTTCTTCCGATGGTCAGAATGTAGTCTAGGGTTGAAGCATACAGTAAGATCCATTTGTACATTGATTAACGTATTGGTTCTTGGGAACATGAATTACAGAGTAGTGGATTTTCTCATGTTTCTTGTACGTGGTCATCCGCATTGTGTACAGTCCGAGGAGTTGGTAAAACTTCTCCGTGAAGTTTGTACGAGAAAGGTGTTAGAAACTGTATATAGCATGCTTGTTGATTGTTATACTAAGGAAAACATGGCGGATGAAGCTCTTCGAGCAATAGGTTTTATTGAGGAATTCGGCATCTTTCCCACAGCTGGGGTGTGTAATAAAGTTCTCAAGTCCTTGTTAGATTCAAACCGGGCAGAATTGGGTTGGGACTTGGTAGAAAAAATGCTGGAAAGGGGTTTGGTGAGCACGGCCATCATCACCTTGTTCATCTCTTACTACTGCAGAAGAGGAGATCTTGATTGTGGATGGAAATTATTGATCGATATGAAAAAGTATGGACTTAAACCAGATGTTGTAGCATATACGACTTTCATTCATTTTCTTTGTAAGGAGTCCTATTTAAAAGAAGCTACTTCATTGGTCTTTAAAATGGTTGAGATGGGCATCTCTCCTGATTCAGTTTTGTTGACTTCAGTAATCTATGGTTATTGCAAAATGGGTCGACCGGAAGATGGTGTTAGTATTATTAGGCTATTTAACATCTACCCCAATGTTTTTGTGTATACCAGCTTCATCTCAAAGTTGTGCAAAGATAGTGACATGCAAAAGGCTTCGACCATTTTCTGTGAGATGACAGCCTCTGGGATTCTTCCTGATTCTTTTGTTTATACCACAATGATTGATGGATACTGTAAAGTAAGAAAAATAAGTAAAGCTCTCCAATACTTGGGAAGAATGTTGAAGGATGGTATGGAACCATCTGTCGCCACATTCACAACACTTATCAATAGTTACTGCAGGATTGGGGACATGGAAGTTGCTCAGCGTCTGCTCGAAAAGATGATAGGAAAAGGGTTGCTACCAGATATTGTTGCATATAACACCATCATTAACGGATACAAGAATAAAGGTGACTTGCAAAAGGCTTATGAGCTACTGGATATGATGAAATCTTTTGGAGTTTCACCTGATATTGTAACATATAACACAATTATACATGGATTAGTAATGAAAGGATATTTGGCTGAGGCAAATGATATGTTGGATGAGCTCATCCGAAGGGGCTTTTCTCCTGATGTAATAACATTCAGCACTGTCATTGGTGGTTACTCAAATAAGGGGCAGTTTGCTGAGGCCTTCCTGATGTGGTGCCAGATGAGCGACTGCAATGTCAGACCTGATGTCATAACATGTAGTGCTCTTATTAGTGGGTTTTGCAGAGCACACCGCATTGACGAAGCTCGTGCATTGTTTCAAAAGATGCAAGGTTTTGGTTTGAATCCTGATCTGATATTGTACAACACTCTCATTCATGGATTTTGTAGATCAGGATATATGGAAGAAGCATACCATTTGATAACTTTGATGATTGAAGATGGTATTGTTCCAGATGAGGTCACTTACAGGGCACTCATTCTTGGATTTGAGAAGAATTTTGCGAGAAATCCTATGGAAAGTGCCTTTCATAAGATGCAAGAACTAGTCCAGAGATATGATCTGTATGTTGCAGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_124548.p1 GENE.R_Transcript_124548~~R_Transcript_124548.p1 ORF type:complete len:703 (+),score=98.97,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|22,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|1.5e-10,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|1.2e-13,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|9e-15,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|1.4e-09,PPR_2|PF13041.2|2.5e-14,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|2.2e-05,PPR_1|PF12854.3|9.8e-08,PPR_1|PF12854.3|4.8e-11,PPR_1|PF12854.3|2e-09,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|1.3e-11,PPR_1|PF12854.3|5.3e-10,PPR_1|PF12854.3|0.26,PPR|PF01535.16|0.18,PPR|PF01535.16|61,PPR|PF01535.16|0.034,PPR|PF01535.16|0.00082,PPR|PF01535.16|0.037,PPR|PF01535.16|0.00038,PPR|PF01535.16|2e-07,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.0009,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|1.1e+03,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|70,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|5.3e+02,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.00081,PPR_3|PF13812.2|4.8e+03,ATP13|PF12921.3|2.5e+03,ATP13|PF12921.3|0.012,ATP13|PF12921.3|6,ATP13|PF12921.3|18,ATP13|PF12921.3|7.1e+02,ATP13|PF12921.3|1.1e+03,ATP13|PF12921.3|3.3e+02,ATP13|PF12921.3|3.6e+03,ECSIT|PF06239.7|5e+03,ECSIT|PF06239.7|5,ECSIT|PF06239.7|3.3e+03,ECSIT|PF06239.7|3.6e+02,ECSIT|PF06239.7|1.4,ECSIT|PF06239.7|3.4,AEP1|PF17049.1|29,AEP1|PF17049.1|1.1e+02,AEP1|PF17049.1|2.2,AEP1|PF17049.1|2.9e+02,AEP1|PF17049.1|1.1e+03,AEP1|PF17049.1|5.9 R_Transcript_124548:176-2284(+)
MKGKFSLINGFTVGFNVVLKRNNLSRYFYSVNSALPALHSSEDETPFLDDVNSSYCVSVERISRPCVGNRYVTNESRFLSSSAMKNWGRYSDGMGMIMSILVKQGWRLNDLGCSCCGVELHEEHVVAALNGVFVETGSAELALRFFRWSECSLGLKHTVRSICTLINVLVLGNMNYRVVDFLMFLVRGHPHCVQSEELVKLLREVCTRKVLETVYSMLVDCYTKENMADEALRAIGFIEEFGIFPTAGVCNKVLKSLLDSNRAELGWDLVEKMLERGLVSTAIITLFISYYCRRGDLDCGWKLLIDMKKYGLKPDVVAYTTFIHFLCKESYLKEATSLVFKMVEMGISPDSVLLTSVIYGYCKMGRPEDGVSIIRLFNIYPNVFVYTSFISKLCKDSDMQKASTIFCEMTASGILPDSFVYTTMIDGYCKVRKISKALQYLGRMLKDGMEPSVATFTTLINSYCRIGDMEVAQRLLEKMIGKGLLPDIVAYNTIINGYKNKGDLQKAYELLDMMKSFGVSPDIVTYNTIIHGLVMKGYLAEANDMLDELIRRGFSPDVITFSTVIGGYSNKGQFAEAFLMWCQMSDCNVRPDVITCSALISGFCRAHRIDEARALFQKMQGFGLNPDLILYNTLIHGFCRSGYMEEAYHLITLMIEDGIVPDEVTYRALILGFEKNFARNPMESAFHKMQELVQRYDLYVAD*

Click here to download the sequence:
Link to NCBI Protein BLAST