Transcript Information: R_Transcript_124842.p1


Annotated TAIR IDAT4G25540.1
Annotated Gene NameHomolog of DNA mismatch repair protein MSH3
Annotated Gene Symbol(s)MSH3, ATMSH3
Annotation TypeOrtholog
Chromosome Positionchr4:13042700-13048115 | Reverse length=1081
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12099500632863
Replicate 20.45730578558225
Replicate 30.6073756180798
Condition 2: 8 Hour
Replicate 10.55649693061921
Replicate 20.10587538750561
Replicate 30.2750244033392
Condition 3: 24 Hour
Replicate 10.73917182361926
Replicate 20.27151360376658
Replicate 30.47672084071841


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_124842.p1 GENE.R_Transcript_124842~~R_Transcript_124842.p1 ORF type:complete len:1056 (+),score=239.30,MutS_V|PF00488.17|5e-80,MutS_III|PF05192.14|4.8e-30,MutS_III|PF05192.14|1.7e+03,MutS_I|PF01624.16|1e-26,MutS_II|PF05188.13|2.5e-08,MutS_II|PF05188.13|3.6e+03,MutS_IV|PF05190.14|6.2e-08 R_Transcript_124842:195-3362(+)
ATGGGGAAACAAAAACAACAAGTAATTTCCCGTTTCTTTGCACCAAAACCCAAAACCCCTTCATCTCCTTCTCCATCCCAACCTTCACCCTCTAAAATCACTACCACCGTCTCTTTTTCCCCTGCCAAACGCCTTCAAACCTCTCAATTCATCTCCCCACCTTCTAAAAAACCCAAACTTTCCCCTCATACTCAAAACCCGATTCCCCAATTTCCCCATTTCCCCACTTCCAACCCTACCCTTCACCAAAAATTCCTCCAGAAACTTCTAGAACCCACTGATGATGCCTTAGAACCTTCCCCAACACAACCCCATTTGGATAAACAACCCACTAAGTATACCCCACTTGAGCAACAAGTGGTTGAACTTAAGAACAAATACCCTGACGTCCTTTTGATGATTGAAGTTGGTTATAAGTTCAGATTCTTTGGTAAAGATGCTGAAATAGCTGCTAGGGTTTTAGGTATTTATGCTCATATTGATCATAACTTTTTAACTGCTAGTATTCCCACATTTAGGCTTAATGTTCATGTTAGGAGGCTTGTTAGCCAAGGCTACAAAGTGGGTGTTGTTAAGCAGACTGAAACTGCCATGATTAAGGCCCACGGGTCAAACCGGGCAGGCCCGTTCACTCGTGGGCTGTCTGCATTGTACACTAAGGCCACCATCGAGGCGGCCGAGGATTTAGGGGGTAGTGAGGAGGGTTGTGGGTCTGTTAATAATTACTTGTTTTGTGTTGTGGAGAGGGAGTTTTTGGTTGAGAATTTGGATTGTGGGATCGAGAGTGGGTTTGAGGTCAAAATTGGGGTTGTTGCTGTTGAAACATCTACTGGGGATATAGTTTATGGAGAGTTTAATGATAATTATTTGAGGTCTGGCCTTGAGGCAGTCATTTTGAGTTTGTCCCCTGCTGAGTTGCTTCTTGGGGAGCCTTTATCAAATAGGACTGAAAAGTTGCTATTGACATATGCTGGTCCTGCATCCAATGCCCGTTTGGAGCGCGCTTCTTGTGATTGTTTTAGAGATGGAGGTGCCTTACCTGAACTGATGAATTTGTTTGAGAACACAAGTGAAGCTGATGTACAACGTTATCAAGATCGCAATGAAGAAGCAGCCAGTGATGAAAACCGTGAGCTGGCCATTAAGGGGATCATGGCAATGCCGCAGTTAGCTGTGCAAGCATTGGCTATTACCATCCGACATCTCAAGCAATTTGGCCTTGAGAAAATATTTTCTCTTGGAGCGTCATTTCGGCCATTTTCAAGCAACATTGAGATGAACCTCTCTGCCAATACACTTCAACAATTGGAGGTTTTGAAGAACAATAATGATGGATCTGAGTCTGGTTCCTTGCTTCATACAATGAATCACACTCTTACCATATTTGGTCAAAGGCTTCTGCGGCATTGGGTAACTCATCCATTATGTGATAGAAACATGATAGCAGCTCGTCTTGATGCTGTTGCTGAGATTGCAGAATCTATGGGTGGTTTTAGTGCTTCAGATAGCTTTCAGAAGCTTGATGAGGGAAACCTGGATGGTGCTGCTGCTCCAAATGATATAAGTTACGTGCTCTCTACGGTTTTAACTGCATTGGGGCAGTCTGCTGATGTTCAACGAGGAACAACTAGAATTTTTCATAAGACAGCAACCCCATCTGAGTTCACTACTGTTGTTCAAGCTATGTTACGAGCTGCAAAGCAACTTCAGCAACTTGAAACTGGAGCTGTTCGTTCCACCTTACTTAGAAACTTGATTCAGACAGCTTCTTCATCTAGTGTGATCAGCTGTTCTGCTAAACTCTTATCAACGTTAAATAAAGAGGCTGCTCACAAGGGGGATCTATTGAATCTGATTGCCATTGATGATGGCCAGTTCTTTGAGGTTGCAAAAGCTCGAACAAAGGTTCAATTGGCAAATGAGAAGTTGGAATCATTGATTACTTTGTATCGCAAGCAGCTTGGTATCCAAAACTTGGATTTCATGACCGTGGCTGGGACAACTCATTTGATAGAGCTGACTTCAGATGCTAGGGTACCTTCAAACTGGGTGAAGGTAAACAGCACAAAGAAAACAGTTCGCTATCATACACCTGAAGTTTTGACTGCTTTAGACCAGTTATCATTGGCAAATGAAGAACTCAGCATTGTTTGTCGTGCTGCATGGGATAAATTCTTGGGGGAATTCGCCAGAAACTATGCAGAATTTCAAGCTGCTGTCCAAGCACTTGCTGCTTTAGATTGTTTGCATTCACTTGCAATTCTATCAAGAACTAAGAACTATGTCCGTCCCGTTTTTGTGAATGATAAAGAGCCTGTTCAGATACAGATTACCTCTGGTCGTCATCCAGTTTTGGAGACTGTATTGCAAGATAACTTTGTCCCAAATGATACTTATCTACACGGAGATCAGGAATACTGTCAGATTGTGACTGGACCAAACATGGGTGGGAAAAGTTGCTATATTCGCCAAGTTGCCCTCATTGTAATCATGGCTCAGGTTGGGTCATTTGTACCAGCATCATCTGCTAGACTCCAGGTCCTAGATGCTGTTTACACCCGAATGGGTGCATCAGACAACATCCAGCAAGGAAGGAGCACGTTTTTGGAAGAACTTAGTGAGGCTTCTAACATACTCCAGCAATGCACAGCACGCTCCCTGGTTATTATGGATGAGTTAGGGAGGGGCACTAGTACTCATGATGGTGTAGCAATTGCCTATGCTACATTGCATTATCTTCTACATCAGAAGCAATGCATGGTGCTCTTTGTCACTCATTACCCTAAAATTGCTGATATCCAGGAAGAATTTCCTGGTTCAGTTGGAACATACCATGTTTCATATCTGACATCAAAGAAGGAAGACAATATTTGCTCAAAACCTGGTAAAAATCATGACAAGATGGACCATGAGGATGTCACTTATCTCTATAAGCTTGTACCTGGTATCTCCCATAGGAGTTTTGGTTTCAAGGTTGCTCAGCTTGCACAGGTTAGCCATTGTTTGTCTTCACTGAATTGCTGCCACTCGACCCTTAAACCACCCAGCCACCACCTCCCCTCAATAGGAAAGGAGAACATATATAGAAAAGGCCATTGTTTTCCCACTACTGGTGGCTGGCACAACGGTAATAAAGCGGGCACTATAACGTATGTATTAGAAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_124842.p1 GENE.R_Transcript_124842~~R_Transcript_124842.p1 ORF type:complete len:1056 (+),score=239.30,MutS_V|PF00488.17|5e-80,MutS_III|PF05192.14|4.8e-30,MutS_III|PF05192.14|1.7e+03,MutS_I|PF01624.16|1e-26,MutS_II|PF05188.13|2.5e-08,MutS_II|PF05188.13|3.6e+03,MutS_IV|PF05190.14|6.2e-08 R_Transcript_124842:195-3362(+)
MGKQKQQVISRFFAPKPKTPSSPSPSQPSPSKITTTVSFSPAKRLQTSQFISPPSKKPKLSPHTQNPIPQFPHFPTSNPTLHQKFLQKLLEPTDDALEPSPTQPHLDKQPTKYTPLEQQVVELKNKYPDVLLMIEVGYKFRFFGKDAEIAARVLGIYAHIDHNFLTASIPTFRLNVHVRRLVSQGYKVGVVKQTETAMIKAHGSNRAGPFTRGLSALYTKATIEAAEDLGGSEEGCGSVNNYLFCVVEREFLVENLDCGIESGFEVKIGVVAVETSTGDIVYGEFNDNYLRSGLEAVILSLSPAELLLGEPLSNRTEKLLLTYAGPASNARLERASCDCFRDGGALPELMNLFENTSEADVQRYQDRNEEAASDENRELAIKGIMAMPQLAVQALAITIRHLKQFGLEKIFSLGASFRPFSSNIEMNLSANTLQQLEVLKNNNDGSESGSLLHTMNHTLTIFGQRLLRHWVTHPLCDRNMIAARLDAVAEIAESMGGFSASDSFQKLDEGNLDGAAAPNDISYVLSTVLTALGQSADVQRGTTRIFHKTATPSEFTTVVQAMLRAAKQLQQLETGAVRSTLLRNLIQTASSSSVISCSAKLLSTLNKEAAHKGDLLNLIAIDDGQFFEVAKARTKVQLANEKLESLITLYRKQLGIQNLDFMTVAGTTHLIELTSDARVPSNWVKVNSTKKTVRYHTPEVLTALDQLSLANEELSIVCRAAWDKFLGEFARNYAEFQAAVQALAALDCLHSLAILSRTKNYVRPVFVNDKEPVQIQITSGRHPVLETVLQDNFVPNDTYLHGDQEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSARLQVLDAVYTRMGASDNIQQGRSTFLEELSEASNILQQCTARSLVIMDELGRGTSTHDGVAIAYATLHYLLHQKQCMVLFVTHYPKIADIQEEFPGSVGTYHVSYLTSKKEDNICSKPGKNHDKMDHEDVTYLYKLVPGISHRSFGFKVAQLAQVSHCLSSLNCCHSTLKPPSHHLPSIGKENIYRKGHCFPTTGGWHNGNKAGTITYVLEI*

Click here to download the sequence:
Link to NCBI Protein BLAST