Transcript Information: R_Transcript_124846.p1


Annotated TAIR IDAT4G25540.1
Annotated Gene NameHomolog of DNA mismatch repair protein MSH3
Annotated Gene Symbol(s)MSH3, ATMSH3
Annotation TypeOrtholog
Chromosome Positionchr4:13042700-13048115 | Reverse length=1081
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7179257369147
Replicate 20.55103412857253
Replicate 30.70482269526623
Condition 2: 8 Hour
Replicate 11.2852309203079
Replicate 21.27487380633
Replicate 31.7412404758018
Condition 3: 24 Hour
Replicate 12.0568533172332
Replicate 21.2374896391093
Replicate 32.1788665299174


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_124846.p1 GENE.R_Transcript_124846~~R_Transcript_124846.p1 ORF type:complete len:1105 (+),score=267.34,MutS_V|PF00488.17|2.9e-84,MutS_III|PF05192.14|5.3e-30,MutS_I|PF01624.16|1.1e-26,MutS_II|PF05188.13|2.7e-08,MutS_II|PF05188.13|3.9e+03,MutS_IV|PF05190.14|6.6e-08 R_Transcript_124846:195-3509(+)
ATGGGGAAACAAAAACAACAAGTAATTTCCCGTTTCTTTGCACCAAAACCCAAAACCCCTTCATCTCCTTCTCCATCCCAACCTTCACCCTCTAAAATCACTACCACCGTCTCTTTTTCCCCTGCCAAACGCCTTCAAACCTCTCAATTCATCTCCCCACCTTCTAAAAAACCCAAACTTTCCCCTCATACTCAAAACCCGATTCCCCAATTTCCCCATTTCCCCACTTCCAACCCTACCCTTCACCAAAAATTCCTCCAGAAACTTCTAGAACCCACTGATGATGCCTTAGAACCTTCCCCAACACAACCCCATTTGGATAAACAACCCACTAAGTATACCCCACTTGAGCAACAAGTGGTTGAACTTAAGAACAAATACCCTGACGTCCTTTTGATGATTGAAGTTGGTTATAAGTTCAGATTCTTTGGTAAAGATGCTGAAATAGCTGCTAGGGTTTTAGGTATTTATGCTCATATTGATCATAACTTTTTAACTGCTAGTATTCCCACATTTAGGCTTAATGTTCATGTTAGGAGGCTTGTTAGCCAAGGCTACAAAGTGGGTGTTGTTAAGCAGACTGAAACTGCCATGATTAAGGCCCACGGGTCAAACCGGGCAGGCCCGTTCACTCGTGGGCTGTCTGCATTGTACACTAAGGCCACCATCGAGGCGGCCGAGGATTTAGGGGGTAGTGAGGAGGGTTGTGGGTCTGTTAATAATTACTTGTTTTGTGTTGTGGAGAGGGAGTTTTTGGTTGAGAATTTGGATTGTGGGATCGAGAGTGGGTTTGAGGTCAAAATTGGGGTTGTTGCTGTTGAAACATCTACTGGGGATATAGTTTATGGAGAGTTTAATGATAATTATTTGAGGTCTGGCCTTGAGGCAGTCATTTTGAGTTTGTCCCCTGCTGAGTTGCTTCTTGGGGAGCCTTTATCAAATAGGACTGAAAAGTTGCTATTGACATATGCTGGTCCTGCATCCAATGCCCGTTTGGAGCGCGCTTCTTGTGATTGTTTTAGAGATGGAGGTGCCTTACCTGAACTGATGAATTTGTTTGAGAACACAAGTGAAGCTGATGTACAACGTTATCAAGATCGCAATGAAGAAGCAGCCAGTGATGAAAACCGTGAGCTGGCCATTAAGGGGATCATGGCAATGCCGCAGTTAGCTGTGCAAGCATTGGCTATTACCATCCGACATCTCAAGCAATTTGGCCTTGAGAAAATATTTTCTCTTGGAGCGTCATTTCGGCCATTTTCAAGCAACATTGAGATGAACCTCTCTGCCAATACACTTCAACAATTGGAGGTTTTGAAGAACAATAATGATGGATCTGAGTCTGGTTCCTTGCTTCATACAATGAATCACACTCTTACCATATTTGGTCAAAGGCTTCTGCGGCATTGGGTAACTCATCCATTATGTGATAGAAACATGATAGCAGCTCGTCTTGATGCTGTTGCTGAGATTGCAGAATCTATGGGTGGTTTTAGTGCTTCAGATAGCTTTCAGAAGCTTGATGAGGGAAACCTGGATGGTGCTGCTGCTCCAAATGATATAAGTTACGTGCTCTCTACGGTTTTAACTGCATTGGGGCAGTCTGCTGATGTTCAACGAGGAACAACTAGAATTTTTCATAAGACAGCAACCCCATCTGAGTTCACTACTGTTGTTCAAGCTATGTTACGAGCTGCAAAGCAACTTCAGCAACTTGAAACTGGAGCTGTTCGTTCCACCTTACTTAGAAACTTGATTCAGACAGCTTCTTCATCTAGTGTGATCAGCTGTTCTGCTAAACTCTTATCAACGTTAAATAAAGAGGCTGCTCACAAGGGGGATCTATTGAATCTGATTGCCATTGATGATGGCCAGTTCTTTGAGGTTGCAAAAGCTCGAACAAAGGTTCAATTGGCAAATGAGAAGTTGGAATCATTGATTACTTTGTATCGCAAGCAGCTTGGTATCCAAAACTTGGATTTCATGACCGTGGCTGGGACAACTCATTTGATAGAGCTGACTTCAGATGCTAGGGTACCTTCAAACTGGGTGAAGGTAAACAGCACAAAGAAAACAGTTCGCTATCATACACCTGAAGTTTTGACTGCTTTAGACCAGTTATCATTGGCAAATGAAGAACTCAGCATTGTTTGTCGTGCTGCATGGGATAAATTCTTGGGGGAATTCGCCAGAAACTATGCAGAATTTCAAGCTGCTGTCCAAGCACTTGCTGCTTTAGATTGTTTGCATTCACTTGCAATTCTATCAAGAACTAAGAACTATGTCCGTCCCGTTTTTGTGAATGATAAAGAGCCTGTTCAGATACAGATTACCTCTGGTCGTCATCCAGTTTTGGAGACTGTATTGCAAGATAACTTTGTCCCAAATGATACTTATCTACACGGAGATCAGGAATACTGTCAGATTGTGACTGGACCAAACATGGGTGGGAAAAGTTGCTATATTCGCCAAGTTGCCCTCATTGTAATCATGGCTCAGGTTGGGTCATTTGTACCAGCATCATCTGCTAGACTCCAGGTCCTAGATGCTGTTTACACCCGAATGGGTGCATCAGACAACATCCAGCAAGGAAGGAGCACGTTTTTGGAAGAACTTAGTGAGGCTTCTAACATACTCCAGCAATGCACAGCACGCTCCCTGGTTATTATGGATGAGTTAGGGAGGGGCACTAGTACTCATGATGGTGTAGCAATTGCCTATGCTACATTGCATTATCTTCTACATCAGAAGCAATGCATGGTGCTCTTTGTCACTCATTACCCTAAAATTGCTGATATCCAGGAAGAATTTCCTGGTTCAGTTGGAACATACCATGTTTCATATCTGACATCAAAGAAGGAAGACAATATTTGCTCAAAACCTGGTAAAAATCATGACAAGATGGACCATGAGGATGTCACTTATCTCTATAAGCTTGTACCTGGTATCTCCCATAGGAGTTTTGGTTTCAAGGTTGCTCAGCTTGCACAGCTGCCACCATCTTGTATTGAACGGGCAATGGTAATGGCTACAAGGTTGGAGTCATTGGTCCAGAAGAGGATGGAAAAATATCAACAAAAATCAGTATCTCCAGATATACTGTTGATGGATTGTGATAATGATGCATTAGATAATATAGCAGAATTTCTTGATTCATCACGTACAGATGAAGAGGAAGGCATGAGTCAATTCATGGTTGCTTTTAGGAAATTCTTCCAGAATTTGTGGTCCATCTTGGGGAATGATGACCTAGTGCAGAGTCATGAACTGTTGAAGTGTGCTATGGGTCTTGCAGCTGAACTAATTACTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_124846.p1 GENE.R_Transcript_124846~~R_Transcript_124846.p1 ORF type:complete len:1105 (+),score=267.34,MutS_V|PF00488.17|2.9e-84,MutS_III|PF05192.14|5.3e-30,MutS_I|PF01624.16|1.1e-26,MutS_II|PF05188.13|2.7e-08,MutS_II|PF05188.13|3.9e+03,MutS_IV|PF05190.14|6.6e-08 R_Transcript_124846:195-3509(+)
MGKQKQQVISRFFAPKPKTPSSPSPSQPSPSKITTTVSFSPAKRLQTSQFISPPSKKPKLSPHTQNPIPQFPHFPTSNPTLHQKFLQKLLEPTDDALEPSPTQPHLDKQPTKYTPLEQQVVELKNKYPDVLLMIEVGYKFRFFGKDAEIAARVLGIYAHIDHNFLTASIPTFRLNVHVRRLVSQGYKVGVVKQTETAMIKAHGSNRAGPFTRGLSALYTKATIEAAEDLGGSEEGCGSVNNYLFCVVEREFLVENLDCGIESGFEVKIGVVAVETSTGDIVYGEFNDNYLRSGLEAVILSLSPAELLLGEPLSNRTEKLLLTYAGPASNARLERASCDCFRDGGALPELMNLFENTSEADVQRYQDRNEEAASDENRELAIKGIMAMPQLAVQALAITIRHLKQFGLEKIFSLGASFRPFSSNIEMNLSANTLQQLEVLKNNNDGSESGSLLHTMNHTLTIFGQRLLRHWVTHPLCDRNMIAARLDAVAEIAESMGGFSASDSFQKLDEGNLDGAAAPNDISYVLSTVLTALGQSADVQRGTTRIFHKTATPSEFTTVVQAMLRAAKQLQQLETGAVRSTLLRNLIQTASSSSVISCSAKLLSTLNKEAAHKGDLLNLIAIDDGQFFEVAKARTKVQLANEKLESLITLYRKQLGIQNLDFMTVAGTTHLIELTSDARVPSNWVKVNSTKKTVRYHTPEVLTALDQLSLANEELSIVCRAAWDKFLGEFARNYAEFQAAVQALAALDCLHSLAILSRTKNYVRPVFVNDKEPVQIQITSGRHPVLETVLQDNFVPNDTYLHGDQEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSARLQVLDAVYTRMGASDNIQQGRSTFLEELSEASNILQQCTARSLVIMDELGRGTSTHDGVAIAYATLHYLLHQKQCMVLFVTHYPKIADIQEEFPGSVGTYHVSYLTSKKEDNICSKPGKNHDKMDHEDVTYLYKLVPGISHRSFGFKVAQLAQLPPSCIERAMVMATRLESLVQKRMEKYQQKSVSPDILLMDCDNDALDNIAEFLDSSRTDEEEGMSQFMVAFRKFFQNLWSILGNDDLVQSHELLKCAMGLAAELITW*

Click here to download the sequence:
Link to NCBI Protein BLAST