Transcript Information: R_Transcript_125042.p1


Annotated TAIR IDAT1G09800.1
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3177121-3180336 | Reverse length=372
E-Value6E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.7890328942962
Replicate 20.66558877400368
Replicate 30.72615018316333
Condition 2: 8 Hour
Replicate 10.56451561838029
Replicate 20.77328698009864
Replicate 31.4646832777257
Condition 3: 24 Hour
Replicate 11.1908948994198
Replicate 21.5254357734117
Replicate 31.892308762556


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125042.p1 GENE.R_Transcript_125042~~R_Transcript_125042.p1 ORF type:complete len:347 (+),score=63.47,PseudoU_synth_1|PF01416.16|7.4e-17,PseudoU_synth_1|PF01416.16|0.0049 R_Transcript_125042:166-1206(+)
ATGAGTTCTAAGCCCGGTTCCACTTCCCCACAACACTCAACGACGTCGTGTAACACCAGTTCCCAGTCGAAGCACTGCCTTGAGCAACGCTCAGAATCACCAGAGCAACGGCCTCTTAAGCTTGCAAAGATCGAAGAACAACAGCAGGAAGTAGAAGAAGGAGAGAGAGTAGAAAAGAACATGAACCCAAGACCTGGAATGCAGAGATACTTAGTTGCACTTGAGTATATTGGCACTAAATTCTCTGGGTCTCAGCAACAGCCTAATCAAAGAACTGTTATGGGTGTTCTCCAGGAAGCTTTTCACAAATTTGTTGGGCAACCAGTTTCAGTCTTTTGCTCGAGTCGAACTGATGCAGGAGTTCATGCCTTATCAAATGTTTGCCATGTGGATGTGGAACGGATTAGTAAGAGGAAACCAGGTGAAGTGTTGCCACCTCATGAGCCTTCAGTAGTTACAAGAGCTATAAACCATTTTTTACAGAAAGAGGGTGACATAATGGTCATTGATGTTCGAAGTGTTCCCTCTGATTTTCATGCCAGATACAAGGCCCTAGAGCGCACGTATTATTACCGCTTGTTTTCTGGTCCTGAGGCATTGTCAACATTTGAGAGAGACCGGGCATGGCATGTTCCTGAGGAGCTAAACATTCAAGCCATGCAGGAAGCATGCAAAGTTCTCATTGGACAGCATGATTTCAGTTCATTTAGGGCGGCTGGTTGTCAGGCCAACTCCCCTATCAGGACTTTAGATGAGCTTCATGTTTCTGAGACTACTTCCTCTCCACATATGCCATCCTTCACTAATGGGATGATTGATGAGCTCACTGATATTGGAAAAGAGACATCCAATGGATCTTGTCAGAAGTTTGGCTTTAGGAAAGGACACCGTTGCTTGGTAGTGAAAGCACGTGCACGCTCTTTTCTCTATCATCAGGTTAGTCTTTCTTTTCTTTCAAAACCTTTTAGCTGTAAATTAATTGCATTCTCATTGTGCTTGCACAATTGGGTAAACCTATGTTTATCTCCATCAGTCTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125042.p1 GENE.R_Transcript_125042~~R_Transcript_125042.p1 ORF type:complete len:347 (+),score=63.47,PseudoU_synth_1|PF01416.16|7.4e-17,PseudoU_synth_1|PF01416.16|0.0049 R_Transcript_125042:166-1206(+)
MSSKPGSTSPQHSTTSCNTSSQSKHCLEQRSESPEQRPLKLAKIEEQQQEVEEGERVEKNMNPRPGMQRYLVALEYIGTKFSGSQQQPNQRTVMGVLQEAFHKFVGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVTRAINHFLQKEGDIMVIDVRSVPSDFHARYKALERTYYYRLFSGPEALSTFERDRAWHVPEELNIQAMQEACKVLIGQHDFSSFRAAGCQANSPIRTLDELHVSETTSSPHMPSFTNGMIDELTDIGKETSNGSCQKFGFRKGHRCLVVKARARSFLYHQVSLSFLSKPFSCKLIAFSLCLHNWVNLCLSPSVF*

Click here to download the sequence:
Link to NCBI Protein BLAST