Transcript Information: R_Transcript_12513.p1


Annotated TAIR IDAT2G42780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:17801037-17802646 | Forward length=293
E-Value7.1E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.694537754538
Replicate 27.5441252578041
Replicate 38.7263762271057
Condition 2: 8 Hour
Replicate 17.2079602442107
Replicate 210.067236846248
Replicate 310.529505727843
Condition 3: 24 Hour
Replicate 112.025518071654
Replicate 27.6381848971696
Replicate 36.7273897522498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12513.p1 GENE.R_Transcript_12513~~R_Transcript_12513.p1 ORF type:complete len:231 (+),score=39.80,Elongin_A|PF06881.7|8.1e-28 R_Transcript_12513:289-981(+)
ATGAGATTGGGATATATATTCTCTGACAGAAATAGAGCAGGGAAAGGGAAAGTTCCCTCTCTGGTCGATTTATGTGTTCAGACTGCCATTGATAATGTTAGGTACATTGGTGATGTTGGTGCGACTGATTCGCATCTTCTCGAGCGCATCTTACCCCATTGTACAGTTGAGCAATTGATGCATATTGAGAACGCTACATCTGATAGGGATCTGAGTCCAATTACTGATAAATTGTGGATGAAATTTTACGAGAGAAAATTTGGCGCAGAGAGTTTAAATGGAGTAATAGAGAGGATGGAAGAAAATCATGTGACATTTAAATGGCGACATTTGTATCAGGCAAAATTGAAGACCCAGGAGGAGGCTCAACAAAAGTCACTTGATCGGCTGACACAGTCATTCAAGAACCAAAATGCTCAAAAGCAAAGTCGACAAATCCAGATTTGCACAAAGGTTCCACCCTCAAAGAAACGGAGTTTTTTCGGAGGGTTTGGAGGATCAAGCAATTTCTCCAATGTGAAGAGCAATATAATGAAGAAGGCAAAAGTTGAATATTTTAACAGCACGGAAATGAAAAACCGGGTAGCTTTGAAGAAAAGTGCTGTACAGGTGCAGCGAACTAGCAGCTTGATGGCAAAACCTCAAAGTGCACGCGGGAAGGAGACTCTCTCAAATTCTAAGCTCAGGAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12513.p1 GENE.R_Transcript_12513~~R_Transcript_12513.p1 ORF type:complete len:231 (+),score=39.80,Elongin_A|PF06881.7|8.1e-28 R_Transcript_12513:289-981(+)
MRLGYIFSDRNRAGKGKVPSLVDLCVQTAIDNVRYIGDVGATDSHLLERILPHCTVEQLMHIENATSDRDLSPITDKLWMKFYERKFGAESLNGVIERMEENHVTFKWRHLYQAKLKTQEEAQQKSLDRLTQSFKNQNAQKQSRQIQICTKVPPSKKRSFFGGFGGSSNFSNVKSNIMKKAKVEYFNSTEMKNRVALKKSAVQVQRTSSLMAKPQSARGKETLSNSKLRK*

Click here to download the sequence:
Link to NCBI Protein BLAST