Transcript Information: R_Transcript_12514.p1


Annotated TAIR IDAT2G42780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:17801037-17802646 | Forward length=293
E-Value3E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4282166840531
Replicate 26.1163135995303
Replicate 310.357829173912
Condition 2: 8 Hour
Replicate 15.6423949661043
Replicate 29.7221225396459
Replicate 38.3655248946131
Condition 3: 24 Hour
Replicate 18.5842235720981
Replicate 28.91799598619
Replicate 38.3744261410738


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12514.p1 GENE.R_Transcript_12514~~R_Transcript_12514.p1 ORF type:internal len:230 (+),score=36.70,Elongin_A|PF06881.7|8e-28 R_Transcript_12514:3-689(+)
AATTGGGAAGAGGAGCAATTGGGCGACATGAGATCGGGATATATATTCTCTGACACAAAAAGAGCAGGGAAAGGGAAAGTTCCCTCTCTGGTCGATTTATGTGTTCAGACTGCCATTGATAATGTTAGGTACATTGGTGATGTTGGTGCGACTGATTCGCATCTTCTCGAGCGCATCTTACCCCATTGTACAGTTGAGCAATTGATGCATATTGAGAACGCTACATCTGATAGGGATCTGAGTCCAATTACTGATAAATTGTGGATGAAATTTTACGAGAGAAAATTTGGCGCAGAGAGTTTAAATGGAGTAATAGAGAGGATGGAAGAAAATCATGTGACATTTAAATGGCGACATTTGTATCAGGCAAAATTGAAGACCCAGGAGGAGGCTCAACAAAAGTCACTTGATCGGCTGACACAGTCATTCAAGAACCAAAATGCTCAAAAGCAAAGTCGACAAATCCAGATTTGCACAAAGGTTCCACCCTCAAAGAAACGGAGTTTTTTCGGAGGGTTTGGAGGATCAAGCAATTTCTCCAATGTGAAGAGCAATATAATGAAGAAGGCAAAAGTTGAATATTTTAACAGCACGGAAATGAAAAACCGGGTAGCTTTGAAGAAAAGTGCTGTACAAGTGCAGCGAACTAACAGCTTGATGATGAGGCCTCAAAGTGCACGCGGGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12514.p1 GENE.R_Transcript_12514~~R_Transcript_12514.p1 ORF type:internal len:230 (+),score=36.70,Elongin_A|PF06881.7|8e-28 R_Transcript_12514:3-689(+)
NWEEEQLGDMRSGYIFSDTKRAGKGKVPSLVDLCVQTAIDNVRYIGDVGATDSHLLERILPHCTVEQLMHIENATSDRDLSPITDKLWMKFYERKFGAESLNGVIERMEENHVTFKWRHLYQAKLKTQEEAQQKSLDRLTQSFKNQNAQKQSRQIQICTKVPPSKKRSFFGGFGGSSNFSNVKSNIMKKAKVEYFNSTEMKNRVALKKSAVQVQRTNSLMMRPQSARGK

Click here to download the sequence:
Link to NCBI Protein BLAST