Transcript Information: R_Transcript_125171.p1


Annotated TAIR IDAT5G46420.1
Annotated Gene Name16S rRNA processing protein RimM family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18829999-18832893 | Forward length=653
E-Value7.8E-103
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8138262846053
Replicate 20
Replicate 30.58361114894656
Condition 2: 8 Hour
Replicate 10.38990230807715
Replicate 20.28485199797689
Replicate 30
Condition 3: 24 Hour
Replicate 10.3655701787851
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125171.p1 GENE.R_Transcript_125171~~R_Transcript_125171.p1 ORF type:complete len:314 (+),score=62.16,RimM|PF01782.14|3.6e-18,PRC|PF05239.12|4.2e+03,PRC|PF05239.12|5.3e-12 R_Transcript_125171:68-1009(+)
ATGATGGTACTACAGAGCTCATTCTCTTTCATATGCTCTGGTAGACCCCTTAATATATCCTTTCACAATCCATGCCTTACTCCAAATTTAAACCCCTCTTCTTGTGTCACTCTTTTGCCCTTCAATAGACTCCAAGCTGCTGCTCATGGGCTCAGAGCCCCTCCCCTTTGTTGCACTGCTACTGAAGAGATTGTAGAGACAAGTGATGGACAGTTGGACTTTATTGAGATTGGGTACATATCTGATGTGCATGGGCTTCAGGGAGAGATTCGTGTAAAGCATAACACTGATTTCCCCGACTTGCGTTTTGGACAGCCTGGGAGAAAATGGTTGCGGCAGGAATATTCCGGAAGACAAAAAGTTTTTGAAGTTGAGCTTGTGACAGGAAGAGGCCATCCAGGGGACAAGAGTTGGATAGTCAAATTGAGTGGCTTTGACAGTATAGATCAGGCTAAACAGCTTGTTGGATCAACATTTCTTGTGAGGGAAAGTGACAGACCAGAGCTTGAGGAGGGCGAATTTTATAGTCGCGATCTTGTTGGCATGAGAGTTATTCTCAAGGACACAGGTGAAGTGGTAGGAACTGTTGTTAATGTCTTCAATAGTGGTGGCAATGATCTCTTGCACGTCATACTTGATTCTTCCACTGAGAATTCTGGGACATCTGAATCAGGCCAGCTTATCTGGATCCCATTTGTTGAAGCAATTGTTCCAGATGTTAATTTGGATAGAAGAGAGATGCAGATTACCCCTCCCAAAGGACTTCTTCAGTTAAATATACGCTCTGATGAGAGGTCCAAGAAAGAAAGACGTTTACTTGTGAGTTATTTGCGACTGCAGTCAATTGTTAAGTTTTCACCTTTCAAAGCAACTAGGAGTGCAATACCAAGTTACCTACTTGCCTCAGTGCACTACCACATAGGAGAAGTTTCATGTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125171.p1 GENE.R_Transcript_125171~~R_Transcript_125171.p1 ORF type:complete len:314 (+),score=62.16,RimM|PF01782.14|3.6e-18,PRC|PF05239.12|4.2e+03,PRC|PF05239.12|5.3e-12 R_Transcript_125171:68-1009(+)
MMVLQSSFSFICSGRPLNISFHNPCLTPNLNPSSCVTLLPFNRLQAAAHGLRAPPLCCTATEEIVETSDGQLDFIEIGYISDVHGLQGEIRVKHNTDFPDLRFGQPGRKWLRQEYSGRQKVFEVELVTGRGHPGDKSWIVKLSGFDSIDQAKQLVGSTFLVRESDRPELEEGEFYSRDLVGMRVILKDTGEVVGTVVNVFNSGGNDLLHVILDSSTENSGTSESGQLIWIPFVEAIVPDVNLDRREMQITPPKGLLQLNIRSDERSKKERRLLVSYLRLQSIVKFSPFKATRSAIPSYLLASVHYHIGEVSCC*

Click here to download the sequence:
Link to NCBI Protein BLAST