Transcript Information: R_Transcript_125370.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value2E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3841107832962
Replicate 21.641890790848
Replicate 32.0084106423167
Condition 2: 8 Hour
Replicate 11.5666311696105
Replicate 20.95378168990839
Replicate 31.2903988592692
Condition 3: 24 Hour
Replicate 12.3937050190023
Replicate 21.8814912797649
Replicate 32.3339969452853


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125370.p1 GENE.R_Transcript_125370~~R_Transcript_125370.p1 ORF type:complete len:422 (+),score=11.20,zf-RING_2|PF13639.2|3.8e+03,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|5.4e-13,zf-RING_11|PF17123.1|1.5e-08,zf-RING_11|PF17123.1|7.4e+03,zf-C3HC4_2|PF13923.2|9.1e+03,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.8e-08,zf-C3HC4|PF00097.21|1.9e-07,GUB_WAK_bind|PF13947.2|2.4e-07,zf-rbx1|PF12678.3|5.3e+03,zf-rbx1|PF12678.3|1.7e-07,zf-RING_5|PF14634.2|1.2e+04,zf-RING_5|PF14634.2|3.2e-07 R_Transcript_125370:40-1305(+)
ATGGATCTACCTTTACTAATTATCCTCTTCTTCTTCCTCCTACTCATGTTAACTCATAATCTTCCCTCCATTAATAGCGCTCCAATTTGCTCTATTTCAAAGTGCGGTGATTCCTCGACCCTGGATATCCGATTCCCATTTAGGTTAACAGGGTCCGGGTTACAGCCTGAACCCTGTGGATATCCAGGTTTCAACGTATCTTGTGATCCTTCTCAACAAACCCTCATTGATCTTCCAAGCTCTAGTGGAAGTTTTATTATCAAGAGCATTGATTATGTAGCCCAAGAAATATGGGTCAACGACCCAAATAATTGCCTCCCTAAACGCTTGCTTAATAATTCCTTTAACCTCTCAGGCTCTCCTTTCACTGGAATTTACTACCAAGAATTCTCCTTCTTTAATTGCTCAACTTCATTAGTCATCACCAAAACAAATGCAACTACTCATTTACATGACCTTATAATTGGTCCAATCTCATGCCTTAGTGACTTGCAGAACCATTTTGTTTATGCTATCCCTTCCACTAATCATAGTACTTTTAATAAGTGTCACCCCTTAGCCCTAGGAGTTAAGGTCCCAGTTCAATGGCCGCTTTCGGTGCAAAACCAGACCGGTTTAGGTTCGTCTCCATCGACGACATTAGACCTCAATGATGACCTCCGGTTGACGTGGTTCAAGCCGGAGTGCCGGCAATGTGAGTCGAAGGGTCAAATGTGTGGGTTGAAGACTAATTCTAGTGGTTCTACTAAAGATGATTATATAATATGCTCGAATATGCCGAATCAAGGGCACTCCGGAAAATTAGCCGTCACCACCTTCATAGCCGTGATACTAGTGGTATGTGCACCAACGATCGTATGCCTATTGGGCTCACTGTGCATTTGGATCAGATCTTATCGTCGACTCAGCCCAAGTCTCCCATTACAGAATGAAGCAATTGCCAACCCCAGGCCTGGTCATCTTGTTCGACTGGGCATAGAAGAGGCTGGTGTTGAATTTGCCAGGCAAGTAGCTGAAATGGGCCTGAGTGGCCAGCCCAACCGACAATCTCGGCCCAAGATCGTTGAATGTTTGGTTGAAGAATTGGGCCCAACTAGAGAGAATACATGTCCAATATGCATGTCTGAATACCGGCCCAAGGACCGAATAGGAAGTATACCAACATGTGGGCATTATTTCCATGCTAAGTGCATCGACAAGTGGCTTCTTTCTCGTGGTATTATAGACAAAACTTGTCCCATTTGTAGGGCTCGTGTGAATTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125370.p1 GENE.R_Transcript_125370~~R_Transcript_125370.p1 ORF type:complete len:422 (+),score=11.20,zf-RING_2|PF13639.2|3.8e+03,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|5.4e-13,zf-RING_11|PF17123.1|1.5e-08,zf-RING_11|PF17123.1|7.4e+03,zf-C3HC4_2|PF13923.2|9.1e+03,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.8e-08,zf-C3HC4|PF00097.21|1.9e-07,GUB_WAK_bind|PF13947.2|2.4e-07,zf-rbx1|PF12678.3|5.3e+03,zf-rbx1|PF12678.3|1.7e-07,zf-RING_5|PF14634.2|1.2e+04,zf-RING_5|PF14634.2|3.2e-07 R_Transcript_125370:40-1305(+)
MDLPLLIILFFFLLLMLTHNLPSINSAPICSISKCGDSSTLDIRFPFRLTGSGLQPEPCGYPGFNVSCDPSQQTLIDLPSSSGSFIIKSIDYVAQEIWVNDPNNCLPKRLLNNSFNLSGSPFTGIYYQEFSFFNCSTSLVITKTNATTHLHDLIIGPISCLSDLQNHFVYAIPSTNHSTFNKCHPLALGVKVPVQWPLSVQNQTGLGSSPSTTLDLNDDLRLTWFKPECRQCESKGQMCGLKTNSSGSTKDDYIICSNMPNQGHSGKLAVTTFIAVILVVCAPTIVCLLGSLCIWIRSYRRLSPSLPLQNEAIANPRPGHLVRLGIEEAGVEFARQVAEMGLSGQPNRQSRPKIVECLVEELGPTRENTCPICMSEYRPKDRIGSIPTCGHYFHAKCIDKWLLSRGIIDKTCPICRARVNS*

Click here to download the sequence:
Link to NCBI Protein BLAST