Transcript Information: R_Transcript_125402.p1


Annotated TAIR IDAT1G49230.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:18209320-18209979 | Forward length=219
E-Value7.2E-79
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.7364599441389
Replicate 26.1912167894212
Replicate 38.6144996088095
Condition 2: 8 Hour
Replicate 17.0109100489976
Replicate 27.8358645768257
Replicate 33.8009782923033
Condition 3: 24 Hour
Replicate 14.5130732157025
Replicate 23.2988635092744
Replicate 33.1802647835663


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125402.p1 GENE.R_Transcript_125402~~R_Transcript_125402.p1 ORF type:complete len:234 (+),score=26.77,zf-RING_2|PF13639.2|3.4e-16,zf-RING_11|PF17123.1|3.3e+03,zf-RING_11|PF17123.1|1.4e-11,zf-RING_11|PF17123.1|1.6e+04,zf-rbx1|PF12678.3|6.7e+03,zf-rbx1|PF12678.3|4.7e-09,zf-C3HC4_2|PF13923.2|9.2e+03,zf-C3HC4_2|PF13923.2|2.9e-08,zf-C3HC4|PF00097.21|4.2e+03,zf-C3HC4|PF00097.21|9.9e-07,zf-C3HC4|PF00097.21|4.7e+02 R_Transcript_125402:51-752(+)
ATGTCCACCTCCACTCTCTCTCCTCTACTCTACAAAGAGCTCATAAACCTTGAATGCCTTCACTACTCAAGAAGGTTGCTACTTGATGGAATTCTTCACAAAACACCACCAGCAGCAGCTGCACCGTCGAAAGCGACAATCACCCCTGTGGATCCTACAGAACCTTACAGTGGTAGCAATGGCTTTGACGCCAATGTGGTAATGGTCCTATCAGTCCTCTTATGTGCCTTGATATGTTCACTAGGACTAAATTCCATAATCAAGTGTGCCCTAAGATGCTCAAATTTAGTGTCAACAACAGAGTCCAACAGCACGGATCCAGCAGCCCGATTAGCAAACAGAGGCATCAAGAAAAAAGCGCTCAAGACTTTTGCAATTGTTAATTACTCACCACACCAGAAGCTACCAGGTCTTGATAGTGAATGTGTTATATGCTTGTCAGATTTTGCTGCTGGAGAAAAAGTGAGGATCCTGCCCAAGTGTAACCATGGATTCCATGTCCGATGTATTGATAAGTGGCTGAAAACTCACTCCTCATGCCCCACCTGCAGGCACTGCTTGATTGAGACGTGCCAGAAGATAGTTGGCTGCAATCAACCTAGCTCATCACAGCCACAGCCACAGCAGCCCCAGACAACAATCATAAACATAGCACCATTAGAACGTGAAGATCTAGCACGAAATTACAGGGGGAACAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125402.p1 GENE.R_Transcript_125402~~R_Transcript_125402.p1 ORF type:complete len:234 (+),score=26.77,zf-RING_2|PF13639.2|3.4e-16,zf-RING_11|PF17123.1|3.3e+03,zf-RING_11|PF17123.1|1.4e-11,zf-RING_11|PF17123.1|1.6e+04,zf-rbx1|PF12678.3|6.7e+03,zf-rbx1|PF12678.3|4.7e-09,zf-C3HC4_2|PF13923.2|9.2e+03,zf-C3HC4_2|PF13923.2|2.9e-08,zf-C3HC4|PF00097.21|4.2e+03,zf-C3HC4|PF00097.21|9.9e-07,zf-C3HC4|PF00097.21|4.7e+02 R_Transcript_125402:51-752(+)
MSTSTLSPLLYKELINLECLHYSRRLLLDGILHKTPPAAAAPSKATITPVDPTEPYSGSNGFDANVVMVLSVLLCALICSLGLNSIIKCALRCSNLVSTTESNSTDPAARLANRGIKKKALKTFAIVNYSPHQKLPGLDSECVICLSDFAAGEKVRILPKCNHGFHVRCIDKWLKTHSSCPTCRHCLIETCQKIVGCNQPSSSQPQPQQPQTTIINIAPLEREDLARNYRGNS*

Click here to download the sequence:
Link to NCBI Protein BLAST