Transcript Information: R_Transcript_125550.p1


Annotated TAIR IDAT5G47090.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19127274-19128493 | Forward length=310
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9314069748625
Replicate 27.4294601473055
Replicate 36.8720212788457
Condition 2: 8 Hour
Replicate 16.2156426404545
Replicate 29.8043866534429
Replicate 38.3776664401786
Condition 3: 24 Hour
Replicate 15.8277510654941
Replicate 24.4110517781155
Replicate 36.2295774878092


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125550.p1 GENE.R_Transcript_125550~~R_Transcript_125550.p1 ORF type:5prime_partial len:130 (-),score=50.90,DUF2052|PF09747.5|3.2e-23 R_Transcript_125550:123-512(-)
TGGGTCGGTAATGAAAGGACTAAGATGGAGGTGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAATCAGAGGAGGAGGAGAAAGAGGAGGTTAAAGCTAATGGGGACTCAATTGCTTCCCAGCCTGTACATGATCAGGATAGAGCAGCCAGTGGTGTTCCTTCTTCCAGTTCAGGGAGCGTCGACAGACCAATGTTATCCCCAGCTGAAATGCAGGAGCAGTTGGATCAGTTCACGTACATAATGCAACAGAAATTTCTGTCAGGTCAAGATCATGAACACATCAATTATTCCAAGATTGATGAAGACGAGACCTTAGATGATCACTGGTTAAAAGAAGTTAATCATGATGCTGAGGAGAAGTACTTTGCTGAGGATTCAGAATCAGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125550.p1 GENE.R_Transcript_125550~~R_Transcript_125550.p1 ORF type:5prime_partial len:130 (-),score=50.90,DUF2052|PF09747.5|3.2e-23 R_Transcript_125550:123-512(-)
WVGNERTKMEVEEEEEEEEEESEEEEKEEVKANGDSIASQPVHDQDRAASGVPSSSSGSVDRPMLSPAEMQEQLDQFTYIMQQKFLSGQDHEHINYSKIDEDETLDDHWLKEVNHDAEEKYFAEDSESE*

Click here to download the sequence:
Link to NCBI Protein BLAST