Transcript Information: R_Transcript_125995.p1


Annotated TAIR IDAT5G64320.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25723247-25725439 | Reverse length=730
E-Value3E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.96984397443328
Replicate 20.40047439486127
Replicate 31.0922831278819
Condition 2: 8 Hour
Replicate 10.63383029154994
Replicate 20.82253925028884
Replicate 31.2364857370836
Condition 3: 24 Hour
Replicate 10.62555333045515
Replicate 20.45072054953496
Replicate 30.65603474538384


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_125995.p1 GENE.R_Transcript_125995~~R_Transcript_125995.p1 ORF type:complete len:734 (+),score=119.29,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|16,PPR_2|PF13041.2|0.097,PPR_2|PF13041.2|6.2e-07,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2.2e-05,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|24,PPR_2|PF13041.2|5.3e-07,PPR_2|PF13041.2|4.9e-07,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|0.063,PPR_2|PF13041.2|0.089,PPR_2|PF13041.2|4e-09,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.027,PPR|PF01535.16|6.8,PPR|PF01535.16|11,PPR|PF01535.16|0.011,PPR|PF01535.16|0.071,PPR|PF01535.16|0.016,PPR|PF01535.16|0.67,PPR|PF01535.16|0.73,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.013,PPR|PF01535.16|0.052,PPR|PF01535.16|1.4,PPR|PF01535.16|0.83,PPR|PF01535.16|57,PPR|PF01535.16|3.1,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|9.6e+03,PPR_1|PF12854.3|98,PPR_1|PF12854.3|95,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|3,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|2.8e-05,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|62,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|61,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|39,PPR_3|PF13812.2|21,PPR_3|PF13812.2|16,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|9,TPR_19|PF14559.2|5.7e+02,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|2.1e+03,TPR_19|PF14559.2|84,TPR_19|PF14559.2|41,TPR_19|PF14559.2|1.7e+03,TPR_19|PF14559.2|2.6e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_125995:281-2482(+)
ATGCAATGGTGTTTGCTCTCAATGGCTGTAAAGATCACACCTTTAGTGTTTTCTAGGAGAATCCCTAGGTGGTTTCTGTCAATTACGTCTTTTTCCTCAGTATCAAGTGCAGTTTACACTCAGAATTACTCAGAAACCTGCCAAAAGGCGCCAAACAGAACTGAGATTGACCCGAGTGTACAATATCTGAAAAACAGGCTGTGCCCAGATGAGTTAATCCGCGTTTTGGATAGAACCCATGATTTGAAATCAGCCCTCAAGCTATTCAAATGGGCCTCTCTTCAAAAACAGTATATTCACACTGCTAGTACATATTCTAGTATCATATTGAAGCTAGGTTTTGCTGGAAATGTGGATGAAATGGAGGGCTTCTGTAAGGAGATGATGAGGGATAAATGCCCAGGTTCTGAAGAAGCTCTTGGTGTTCTTGTGGATAAGTTTGTTAGGAATGGTAGGTTATGTGAAGCTATGAGGGTGTTATTGGCTTTGAATGGTAGTGGGTGTAAGTCTGATATAGGTACATGGAATGTTATGTTAGGTGCCCTTGTTGAGGCGAATAGAGATTTCCGTGATGTGGTGTTGGTTTATAAGGAGATGGTGAAATCAAGAATTCTTCCTAGTGTTGACACTTTGAATTATCTTATAAAAGCTTTATTCGATGCCGATATGGTCAGTAATGCCTTGGATCAGTTTAGGAAAATGAGGAGAAAAGGTTGTGTTCCTAATTGTAGGACATTTGAGATTGTTATATGTGGCCTTGTGGCTTCAAATAGGGCGGATGAAGCATTGGGTGTGATGAATGAGATGTTTGTAAATGGGGTTGATCTTGATGAGAGTTTCTATAATGATGTTATAACACTGTTGTGTGGAGAGAATAAGCTAGGAGAAGCAATGAGGCTGTTTGAAATGATGAGAGTTTCACAATTCAAGCCTGATTATCGCGTCTACGAATCTCTTGTTAAATGTTTGAGTGCGCATCGTCGTTTCAGTGAAGCGACTGAGCTCTTTTGTGAGTATAGGAATGGTGGGTTTAGTCCTTCAAAGGACATGATCATGGATGTTATAGTTGCATACTGTAAACTAGGGGATCTTGATGAGGCAGGGAATTTGTTAGATAACAATAAAATCCTTGACCCTTTTCCTTATAATGCACTGCTCCGGGGTTACTGTGATGCTCATAACTTCCTGGCTGCAAAAGATTTACTTTGTAGAATGCTCCTGCTGAATGTTGCTGATACTTTATCATTTACAATTCTAATTCAAGGGCTTTGTAACATAAACAATGTTAAACATGCTTATGAGGTTCTTGGTAAGATGTTTGTCCTGTCATTTTGGCCTGACAGTGCGACATACTCTGCTCTTGTCATTGGCAATTGTAATTTATGCAAATATGAGGATGCTATGAAGCTGTTTCAACAAGTTCGGGTGAAAGATTTGATTTTGGGTCCTAATTCTTATACCAAGCTAATTGAGGGACTTTGCAATGTAGGAAGGTCTCAGGATGCTTCTGAAGTATATATGTACATATTGATGCAGAATGCTAAGCTTCCTTGTTCTTTATTTAGCAGTTTGATCAAAAGAATTTGTGCAACAGGAAGGGTGGATGAAGCAATCAAGCTCCTAAAGTTTGGTCATCAGTTTGAGAATCCTGCCAGTGTTTCCACTTATGCAGCCGTAATGCGTGCCTTATTCAAAGTCAACAGGCTGAAGGATACCCTGATTTTTTACTCGCAAATTTTGAGACGTGGTCTAGTTTTTGATGTGGAGATAAATTGCATTTTGATCCAATGCATGAGTTCCTTGTCTCAAACGAACGATTGTATTTTCATTTTCAAGCAGATGGTTAGTGAAGGTTTCTTCCCTGACAGTGAAACACTTGCTATCCTTTTGTCCCATTTAGCCAGACATTCTCAGTTACATGCAGTATGGACAGTAATAAATAAGCTTTATGAGGAAGATGAGGTTCTTGATCCAGCAGTATACAACTTGCTGATCAATGGTCTATGGAAAGAGGGTTACAAATCTGAGGCCAGTCGGCTGCTCGATACGATGTTGGAGAAGGGTTGGGTTCCAGATGCCCATACTCATGGAGTGCTGATTGGATCTCTCGGTAAGGCAGAAGAGCAAAAATTCAAACATGACAATGTGGTTATGACAGATGAAGTTAGCAGCATACTCTCAGAGGGGTTAGCAGAAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_125995.p1 GENE.R_Transcript_125995~~R_Transcript_125995.p1 ORF type:complete len:734 (+),score=119.29,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|16,PPR_2|PF13041.2|0.097,PPR_2|PF13041.2|6.2e-07,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2.2e-05,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|24,PPR_2|PF13041.2|5.3e-07,PPR_2|PF13041.2|4.9e-07,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|0.063,PPR_2|PF13041.2|0.089,PPR_2|PF13041.2|4e-09,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.027,PPR|PF01535.16|6.8,PPR|PF01535.16|11,PPR|PF01535.16|0.011,PPR|PF01535.16|0.071,PPR|PF01535.16|0.016,PPR|PF01535.16|0.67,PPR|PF01535.16|0.73,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.013,PPR|PF01535.16|0.052,PPR|PF01535.16|1.4,PPR|PF01535.16|0.83,PPR|PF01535.16|57,PPR|PF01535.16|3.1,PPR|PF01535.16|0.00055,PPR_1|PF12854.3|9.6e+03,PPR_1|PF12854.3|98,PPR_1|PF12854.3|95,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|3,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|2.8e-05,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|62,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|61,PPR_3|PF13812.2|5.2,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|39,PPR_3|PF13812.2|21,PPR_3|PF13812.2|16,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|9,TPR_19|PF14559.2|5.7e+02,TPR_19|PF14559.2|1.7e+02,TPR_19|PF14559.2|2.1e+03,TPR_19|PF14559.2|84,TPR_19|PF14559.2|41,TPR_19|PF14559.2|1.7e+03,TPR_19|PF14559.2|2.6e+02,TPR_19|PF14559.2|1.3e+03 R_Transcript_125995:281-2482(+)
MQWCLLSMAVKITPLVFSRRIPRWFLSITSFSSVSSAVYTQNYSETCQKAPNRTEIDPSVQYLKNRLCPDELIRVLDRTHDLKSALKLFKWASLQKQYIHTASTYSSIILKLGFAGNVDEMEGFCKEMMRDKCPGSEEALGVLVDKFVRNGRLCEAMRVLLALNGSGCKSDIGTWNVMLGALVEANRDFRDVVLVYKEMVKSRILPSVDTLNYLIKALFDADMVSNALDQFRKMRRKGCVPNCRTFEIVICGLVASNRADEALGVMNEMFVNGVDLDESFYNDVITLLCGENKLGEAMRLFEMMRVSQFKPDYRVYESLVKCLSAHRRFSEATELFCEYRNGGFSPSKDMIMDVIVAYCKLGDLDEAGNLLDNNKILDPFPYNALLRGYCDAHNFLAAKDLLCRMLLLNVADTLSFTILIQGLCNINNVKHAYEVLGKMFVLSFWPDSATYSALVIGNCNLCKYEDAMKLFQQVRVKDLILGPNSYTKLIEGLCNVGRSQDASEVYMYILMQNAKLPCSLFSSLIKRICATGRVDEAIKLLKFGHQFENPASVSTYAAVMRALFKVNRLKDTLIFYSQILRRGLVFDVEINCILIQCMSSLSQTNDCIFIFKQMVSEGFFPDSETLAILLSHLARHSQLHAVWTVINKLYEEDEVLDPAVYNLLINGLWKEGYKSEASRLLDTMLEKGWVPDAHTHGVLIGSLGKAEEQKFKHDNVVMTDEVSSILSEGLAET*

Click here to download the sequence:
Link to NCBI Protein BLAST