Transcript Information: R_Transcript_126239.p1


Annotated TAIR IDAT5G12350.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3995789-4000545 | Forward length=1075
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.141615395091
Replicate 22.0794412912295
Replicate 32.3567508872964
Condition 2: 8 Hour
Replicate 12.3308659901705
Replicate 21.8705737694069
Replicate 33.2288922738188
Condition 3: 24 Hour
Replicate 13.3774466402296
Replicate 22.7144934019172
Replicate 33.5146602718383


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_126239.p1 GENE.R_Transcript_126239~~R_Transcript_126239.p1 ORF type:complete len:1040 (+),score=215.08,RCC1|PF00415.14|7.2,RCC1|PF00415.14|8.9e-13,RCC1|PF00415.14|7.2e-07,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|7.4e-14,RCC1|PF00415.14|6.4e-06,RCC1|PF00415.14|1.3e-12,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|1.7e-09,RCC1_2|PF13540.2|0.011,RCC1_2|PF13540.2|0.45,RCC1_2|PF13540.2|1.5,RCC1_2|PF13540.2|6.7e-05,RCC1_2|PF13540.2|1.2e+02,BRX|PF08381.7|3.2e-26,FYVE|PF01363.17|4.1e-14,FYVE|PF01363.17|7.1e+03,BRX_N|PF13713.2|7.5e-12 R_Transcript_126239:95-3214(+)
ATGGGTGATTCACAGAAGTGTGGCCCCGCAGAAAGGGACATTGAACAGGCCGTCACAGCATTGAAGAAAGGGGCAACTCTGCTGAAGTATGGTCGAAGAGGGAAGCCTAAGTTTTGCCCATTTCGACTTTCCAATGATGAATCAGCATTGATGTGGTACTCAGGCAAGGAGGAGAAACAGCTTAAACTCAGTCAAGTTTCTAAAATTATCCCTGGACAAAGAACTGCAATTTTTCAGCGATATCCTCGACCTGAGAAGGAATACCAATCATTTTCACTTATATATAGTGATAGATCTTTGGATTTGATATGTAAGGACAAGGAAGAAGCTGAAGTTTGGTTTGTTGCTCTCAAAGCACTAACTTCCAATGGCGGCTGGCGTAAGTGGAGAAGTGAACCAAGAGAGAGCAGTACGTCGATTGAGGGTCCCCCTCCTCGAAGATATCATCAATCGTTTTCATCTTTGGATACTGTGGATGCTCTCTCTCCTGTTCCTATTGATAGCCCTCCATCCACTGGACTCGGGAAGGCATTTTCAGACATTATACTGTATACAGCATCCTCCAAAAGCTTTAGTCAGGATGATTCAGCCACCAATTTTGTCAGTTTACCGTCAACCACCAGCGTAGATAACTGCACTAACCGAAGTTCAACTTCTGACAATGTTCGGGTTAGTTTATCAAGTGTGGTAAGCTCATCAAGTCAAGGGTCTTGCCATGATGATTTTGATTCCTTGAGTGATATTTTCATTTGGGGAGAAGGCATTGGTGAGGGGATTTTGGGTGGAGGTACCATCAAAGTTCGAGATTCTCTTTATAGCAAATTTGATGCTCTTTTGCCCAAGGCATTGGAATCTAAAGTGGTCCTTGATGTTCATTATATAGCTTGTGGAGTAAGGCATGCAGCATTGCTAACCAAGCAAGGGGAAATCTTTAGTTGGGGGGAGGAGTCTGGAGGCAGGCTTGGTCATGGCATAGAAGTTGATGTTTCCCATCCAAAGCTCGTTGATGGTTTTAGTGGCATGAATGTTGAACAAGTTGCATGTGGAGAATATCATACTTGTGCTGTTACCAGCTCTGGGGATCTTTTCACGTGGGGTGATGGTGCCTGTAATTCCGGTATGCTTGGACTTGGAAGTGATACTGGCCACTGGACTCCGAAAAGGGTATGTGGACCTTTAGATGGTATGCAAGTATCATATGTCTCCTGTGGACCTTGGCATACCGCTGTAGTTGTATCAACTGGTCAACTGTTTACGTTTGGAGATGGGACTTTTGGTGTCCTTGGGCATGGAGATCGCATCAGCTGCACTACTCCAAGAGAAGTAGGTGCTTTAAGAGGACTGCGAACACTGAGGGTGGCTTGTGGTGCTTGGCATACTGCCGCTATAGTTGAGGTCCTGGTAAGCGAAGCTTCAAGTGTTGCTTCCTTTGACAGATCTTTCTTAGCAACAGGGAAGCTCTTTACCTGGGGTGAGGGGGATAAAGGCCAGCTTGGACATGGTGACAAAGTAGCTAGACTCGTGCCTGAATGTGTCTCAGCACTAATGGACGTAAGTTTCACCAAGGTAGCTTGTGGATGTGAACTCACAGTAGCTCTCTCATCATCTGGGCGGGTTTATACGATGGGCAATACTATTTATGGACAAGTGGGATGCCCTGAAGCCGATGGAAGTACTCCAGTGTGTGTTGTTGGGGGTAAAATTGGTGACAGTTTCATAGAAGATATTGCCTGTGGTTCTCATCATGTCGCTGCTGTAACTTCTAAAGCAGAACTCTTTACATGGGGAAAGGGTACAAATGGGCAATTAGGTCATGGAGATGTTGACCACAGAAAGGAACCTACTTTGGTTGACTTTGTGAAAGATAAGCAAGTGAAAAGTGTAGTGTGTGGATCCAATTTCACTGCAGTTATTTGCCTTCACAAATGGGTATCTGGGATTGACCAAAATGCATGCACTGGTTGTCACAACCCATTTGGCTTCAGAAGAAAACGTCACAACTGCTACAATTGTGGCCAGGTCTTCTGCAAAGCATGTAGCAGCCGAAAATCTCTTAAAGCCTCTTTAGCTCCAAACATGAATAAGCCTTATCGGGTGTGTGATGATTGCTTCGTCAAGCTGAAGAAAGTCATGGAACCAGGACAAGTACGAATCCCTAGACCTAATAGTAAAAATGGTGTGAACAAGTCCAATGAAGCAGCAGAAAAGGAGACATTAATTCCCAAATTGGCTGGTTTGACATTTGTGAATTCGCTGAAAAGAACCGACAGCGAACGTTCGAAGAGTGGAAAACTTGGAAAAGTTGAGAGCCCTTTTCATATTTCAAATGGGAGCTTTCAACATGGAAGTGGTCTCCTCTCAAGTCCTCCAACTCCCCTTTTTGAGCCCTCAAACAAACGTGTTTCAGCCTCTGCTCCTGGTTCCAGGATGGTTTCTCGAGCAGTATCCCCTGTTTCTCAAAGGTGCAGTCCAATTCGATCGTCAGCATTACTAGCTCCTCTCAGTGGTCCTACATCTCCTGAAGTAACTCCTACCTCAAAGTATAGGAATGATAATGTTAGCCTAGAAGTCATTCAACTAAAAGCAGAGGTAGAGAAGCTAGTTGGCAAAAATAAGATGCTTCAAGCTGAACTTGGGAAAACAAGAAAACAACTCAAGGAGGCCAAAGCGCTAGCCGCAGATGAAGCTGAAAAATCTAAAGCTGCCAAGGAAGTCATCAAATCACTGACTGTTCAGTTGAAAGAGATGGCTGAGAAGTCACAAGAAGGACTGCATGCAAGCAGCAAAGTGGATTCTCACTCTGGGCAATCTTCCAGCTCTGCAAATGGTGCGTCTCTTGACAAACATTTGACCTGTCTTCTGTCCCCAAGAAGCGAGTCGAACATGAGGACTATGGATGCCCTATTAACCAACGGCACAAAAGTACAAACTGAGAAGACAGAGTGGGTTGTACAAGATGAGCCAGGAGTCTATATTACTCTTGGCTCCTTGCCAGGAGTTGGTAATGAGCTGAAGCGTGTTCGCTTCAGCCGTAAACGTTTTAGTGAGGAACAAGCAGAGAAGTGGTGGGCTGAAAACAGCAATAGAGTCTGCGAACGCCACAATATACGGAGTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_126239.p1 GENE.R_Transcript_126239~~R_Transcript_126239.p1 ORF type:complete len:1040 (+),score=215.08,RCC1|PF00415.14|7.2,RCC1|PF00415.14|8.9e-13,RCC1|PF00415.14|7.2e-07,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|7.4e-14,RCC1|PF00415.14|6.4e-06,RCC1|PF00415.14|1.3e-12,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|1.7e-09,RCC1_2|PF13540.2|0.011,RCC1_2|PF13540.2|0.45,RCC1_2|PF13540.2|1.5,RCC1_2|PF13540.2|6.7e-05,RCC1_2|PF13540.2|1.2e+02,BRX|PF08381.7|3.2e-26,FYVE|PF01363.17|4.1e-14,FYVE|PF01363.17|7.1e+03,BRX_N|PF13713.2|7.5e-12 R_Transcript_126239:95-3214(+)
MGDSQKCGPAERDIEQAVTALKKGATLLKYGRRGKPKFCPFRLSNDESALMWYSGKEEKQLKLSQVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKEEAEVWFVALKALTSNGGWRKWRSEPRESSTSIEGPPPRRYHQSFSSLDTVDALSPVPIDSPPSTGLGKAFSDIILYTASSKSFSQDDSATNFVSLPSTTSVDNCTNRSSTSDNVRVSLSSVVSSSSQGSCHDDFDSLSDIFIWGEGIGEGILGGGTIKVRDSLYSKFDALLPKALESKVVLDVHYIACGVRHAALLTKQGEIFSWGEESGGRLGHGIEVDVSHPKLVDGFSGMNVEQVACGEYHTCAVTSSGDLFTWGDGACNSGMLGLGSDTGHWTPKRVCGPLDGMQVSYVSCGPWHTAVVVSTGQLFTFGDGTFGVLGHGDRISCTTPREVGALRGLRTLRVACGAWHTAAIVEVLVSEASSVASFDRSFLATGKLFTWGEGDKGQLGHGDKVARLVPECVSALMDVSFTKVACGCELTVALSSSGRVYTMGNTIYGQVGCPEADGSTPVCVVGGKIGDSFIEDIACGSHHVAAVTSKAELFTWGKGTNGQLGHGDVDHRKEPTLVDFVKDKQVKSVVCGSNFTAVICLHKWVSGIDQNACTGCHNPFGFRRKRHNCYNCGQVFCKACSSRKSLKASLAPNMNKPYRVCDDCFVKLKKVMEPGQVRIPRPNSKNGVNKSNEAAEKETLIPKLAGLTFVNSLKRTDSERSKSGKLGKVESPFHISNGSFQHGSGLLSSPPTPLFEPSNKRVSASAPGSRMVSRAVSPVSQRCSPIRSSALLAPLSGPTSPEVTPTSKYRNDNVSLEVIQLKAEVEKLVGKNKMLQAELGKTRKQLKEAKALAADEAEKSKAAKEVIKSLTVQLKEMAEKSQEGLHASSKVDSHSGQSSSSANGASLDKHLTCLLSPRSESNMRTMDALLTNGTKVQTEKTEWVVQDEPGVYITLGSLPGVGNELKRVRFSRKRFSEEQAEKWWAENSNRVCERHNIRSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST