Transcript Information: R_Transcript_126497.p1


Annotated TAIR IDAT1G19720.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6819926-6822610 | Reverse length=894
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3665056480188
Replicate 21.2072280960893
Replicate 31.8852219216676
Condition 2: 8 Hour
Replicate 12.15321022084
Replicate 21.5629928682678
Replicate 32.435221717955
Condition 3: 24 Hour
Replicate 12.5364882844589
Replicate 21.4919002631732
Replicate 32.4429343449863


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_126497.p1 GENE.R_Transcript_126497~~R_Transcript_126497.p1 ORF type:complete len:887 (+),score=159.97,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.04,PPR_2|PF13041.2|5.1e-05,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|3.6e-12,PPR_2|PF13041.2|4.1e-11,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|7.2e-10,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|3e-07,PPR_2|PF13041.2|4.7,PPR|PF01535.16|9.7e+02,PPR|PF01535.16|0.00044,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.001,PPR|PF01535.16|4.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.033,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|2.6,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.13,PPR|PF01535.16|0.0013,PPR_1|PF12854.3|0.0072,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.6e+04,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5e+03,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.083,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.92,PPR_3|PF13812.2|8,PPR_3|PF13812.2|1.8,DYW_deaminase|PF14432.2|3.7e+03,DYW_deaminase|PF14432.2|2.7e-20,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|5.1e+03,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|77,TPR_19|PF14559.2|9.4,TPR_19|PF14559.2|6.2,TPR_19|PF14559.2|3.5e+02,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|1.2e+04 R_Transcript_126497:483-3143(+)
ATGGAGAGCCTAATCATCCCAATTAAGTCTACTCCTCCTCTGTCACTCCCTTCTGATTTCTCTCCAAAATCCCTCAAACCTAATTTTTCTCTTTCCAAAACCCACCAATCATTTCGCCAAAAGACCCCTGATTTTGTTCATATAAATCATCTTCTTAGGATTGGTCGTTTTGGGGAAGCCATAACTGCCCTTGACTTACTTGCCCGTAATGGGTGTAAGCTAAAATCTGATACTTTTACTCAGTTACTAGATTCTTGCATTGATATTAACTCAGTTCAGTTAGGCCGCGAGCTTCATGCTAGAATTCACTTGGTTGATGAAGTTAATCCCTTTGTTGAGACTAAGTTAGTTAGTATGTATGCCAAATGTGGGTGTTTGGATGATGCACGGAAGGTGTTCGATGAAATGTCTGACAGAAATTTGTTTACTTGGTCTGCAATGATTGGGGCATACTCTAGGGAGCAGAGGTGGAGTGAGGTTGTGGAGTTGTTTGGTTTGATGATGCAAGAGGGTATTTTTCCTGATGGGTTTTTGTTTCCAAAGATTTTACAAGCTTGTGGGAATTGTGGGGATTATGAGACAGGAAGGTTGTTGCATTCTTTGGTGGTTAGAAGTGGGATGGGTTCGCGTAAACGGGTTAATAATGCAATGTTGGCAGTGTATGCTAAGTGTGGTAAGTTGAGTTTAGCTAGGAGATTTTTTGAGGAGATGGATGAGAGGGATATGGTGAGTTGGAACTCAATGATATTTGGGTATTGTCAAAAAGGCAAGAATAATGAAGCACATCGGATGTTTGATATGATGTGTGACGAAGGGATTGAGCCGGGGTTAATAACTTGGAACATATTGATTTCAGGTTATAACCAGTCAGGTGATTGTGATGCTGCTATGGAAGTCATGAACAAGATGGAGAGTTTTGGAGTACTTCCTGATGTGTTTACCTGGACATCAATGATCTCAGGACTTGTGCAGAACAATAGGATAGTTGAAGCATTAGAACTCTTTAAGCAGATGCTTGTGGTTGGTGTTCAACCAAATGGAGTTACTGTAGCCAGTGCAGTCTCTGGATGTGCATCTGTTAAATTTCTGGAGAAGGGTGAAGAGTATCATTCATTGGCTGTTAAAATTGGTCTCTCTGACAATGTTTTGGTAGGGAATGCATTGGTTGACATGTATTCCAAGTGTGGGGAACTTGAAGCTGCTCGCAAGGTCTTTGACCTTGTATCTGAGAAGGATGTTTATACATGGAACTCAATGATAGGAGGGTACTGTCAAGGTGGCTATTGTGGCAAAGCCCATGATCTCTTTATGAAAATGCAAAACACAGAGATACAGCCTAATGTTGTGACATGGAATGTGATGATCTCTGGTTACATACATAATGGGGATGATGAGCAAGCCATGCATCTCTTTCAGATGATGAGAAAAGGGGGGATAGTTAAGCCAGACACATCATCATGGAACTCTCTTATATCTGTTTATCTGCAAATGGGGCACAAGAACAAGGCATTGGGGGTCTTTCGTCAAATGCAATCCTCAAGTTTTCGGCCCAATCAGGTTACAATTTTGACTATCTTACCTCCTTGTGCTAATTTAATTCCAGCAAACAAGGTTAAAGAGATTCATGCTTCTGTACTTCGTGGCAATTTGCATTCTGAGATAGCTATTCTAAATTCTCTGGTTGACACTTATGCCAAGTCGGGGAATATTGCATATGCGAGGTCTGTATTTGACTGGATGTCATCAAAGGATATTATCACTTGGAACTCGATGATAGCTGGTTATGTTTTACATGGCTGTTCAGATGATGCACTAAATACCTTTGATCAGATGGTGAGTGAGAAATACGGACCAAAAAGAGGTACCTTTGTGAGTCTTATACTTGCGTGCAGCCGAGCAAAACTGGTTGAGAAGGGGAAGCAAATCTTCTATAGCATGACCAAAGATTACCAAATAATACCTGGATCTGAACATTATTCTGCAATGGTAGATTTATTTGGCCGTTCAGGTAGGCTAAAAGAGGCAATTGAATTTATTGAATGCATGGAAGTGGAACCTGACTCAGCTGTCTGGGAAGCATTGCTCACTGCTAGTCGCTGTCATGGCAATGTTCCTTTGGTTATTCATGCAGGTGAACAATTGCTTAGATTAAATCCTAATCATAGTCTGGCTAACCTTTTAGTCTCATGGGCGTACTCGGTGTGTGGAAGGTCTTTCAAGTCTCTGAAGGAGAGGAGTCCACCAGGGAGTAAAGATACCAAGAAAGCTTGTGGATGCAGCTTGCTTGAATTAAGAAACAAGGTGTATTCATTTGTTAGTGGTGACCACTCCACTCCAGGTTTTGACTCTCTTTATACCTGGCTGGAGAGACTAGATGGAAAAATAAAGCTGTCTGATACAAACAATATGCATTCTGTGCACGATGAAGATGAAAAAATTTGTGGTATCCACAGTGAGAAACTTGCCCTGGCTTTTTCTCTTGTCAGCACTCACTTCAGAATAAAATGCATAAGGATTGTGAAGAACTCCCGAATTTGTGATGAATGCCATGTGATCGCTAAATATATTTCTTCATCATATTGCTGCGAGATATTATTGAGTGATACAAAGTGCTTGCACCACTTCAAAAATGGCCATTGTTCCTGTGGGGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_126497.p1 GENE.R_Transcript_126497~~R_Transcript_126497.p1 ORF type:complete len:887 (+),score=159.97,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.04,PPR_2|PF13041.2|5.1e-05,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|3.6e-12,PPR_2|PF13041.2|4.1e-11,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|7.2e-10,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|3e-07,PPR_2|PF13041.2|4.7,PPR|PF01535.16|9.7e+02,PPR|PF01535.16|0.00044,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.001,PPR|PF01535.16|4.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.033,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|2.6,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.13,PPR|PF01535.16|0.0013,PPR_1|PF12854.3|0.0072,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.6e+04,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5e+03,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.083,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.92,PPR_3|PF13812.2|8,PPR_3|PF13812.2|1.8,DYW_deaminase|PF14432.2|3.7e+03,DYW_deaminase|PF14432.2|2.7e-20,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|5.1e+03,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|77,TPR_19|PF14559.2|9.4,TPR_19|PF14559.2|6.2,TPR_19|PF14559.2|3.5e+02,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|1.2e+04 R_Transcript_126497:483-3143(+)
MESLIIPIKSTPPLSLPSDFSPKSLKPNFSLSKTHQSFRQKTPDFVHINHLLRIGRFGEAITALDLLARNGCKLKSDTFTQLLDSCIDINSVQLGRELHARIHLVDEVNPFVETKLVSMYAKCGCLDDARKVFDEMSDRNLFTWSAMIGAYSREQRWSEVVELFGLMMQEGIFPDGFLFPKILQACGNCGDYETGRLLHSLVVRSGMGSRKRVNNAMLAVYAKCGKLSLARRFFEEMDERDMVSWNSMIFGYCQKGKNNEAHRMFDMMCDEGIEPGLITWNILISGYNQSGDCDAAMEVMNKMESFGVLPDVFTWTSMISGLVQNNRIVEALELFKQMLVVGVQPNGVTVASAVSGCASVKFLEKGEEYHSLAVKIGLSDNVLVGNALVDMYSKCGELEAARKVFDLVSEKDVYTWNSMIGGYCQGGYCGKAHDLFMKMQNTEIQPNVVTWNVMISGYIHNGDDEQAMHLFQMMRKGGIVKPDTSSWNSLISVYLQMGHKNKALGVFRQMQSSSFRPNQVTILTILPPCANLIPANKVKEIHASVLRGNLHSEIAILNSLVDTYAKSGNIAYARSVFDWMSSKDIITWNSMIAGYVLHGCSDDALNTFDQMVSEKYGPKRGTFVSLILACSRAKLVEKGKQIFYSMTKDYQIIPGSEHYSAMVDLFGRSGRLKEAIEFIECMEVEPDSAVWEALLTASRCHGNVPLVIHAGEQLLRLNPNHSLANLLVSWAYSVCGRSFKSLKERSPPGSKDTKKACGCSLLELRNKVYSFVSGDHSTPGFDSLYTWLERLDGKIKLSDTNNMHSVHDEDEKICGIHSEKLALAFSLVSTHFRIKCIRIVKNSRICDECHVIAKYISSSYCCEILLSDTKCLHHFKNGHCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST