Transcript Information: R_Transcript_12660.p1


Annotated TAIR IDAT5G61060.2
Annotated Gene Namehistone deacetylase 5
Annotated Gene Symbol(s)HDA05
Annotation TypeOrtholog
Chromosome Positionchr5:24567137-24570917 | Reverse length=664
E-Value6.1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3312110740011
Replicate 23.8552529012977
Replicate 33.7530813010645
Condition 2: 8 Hour
Replicate 11.7292277505117
Replicate 22.5266533153882
Replicate 35.2301250940098
Condition 3: 24 Hour
Replicate 16.8095190929631
Replicate 23.1774525520323
Replicate 36.6776048197314


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12660.p1 GENE.R_Transcript_12660~~R_Transcript_12660.p1 ORF type:3prime_partial len:354 (+),score=68.93,Hist_deacetyl|PF00850.15|2.5e-33 R_Transcript_12660:116-1174(+)
ATGGAGGGAGAAGCGAAGTCAGAGAGAGTGACGAAACGTGTAGGGTTAGTGTACGACGAGAGGATGTGCAAGCATGATACTCCTGATGGCGATGAACATCCTGAATCTCCTCTTCGAATTAGGGCTATCGTTAAGAAGCTTCTCGATTCTGGCCTTCTTTCTAGGTGTGCTCTTTTGAATGCAAAAGAAGCAGAAGATAAATTTATAGAGTTAGTTCATTCGAAATATCATGTTGACTTGATTAAGAATATAAGCTCCAAGCAGTTTGATTCTCGTAGGGACAGAATTGCATCTAAATTTAATTCCATTTATTTGAACAAAGGCTCATCACAAGCTGCTTATCTGGCTGCGGGCTCTGTCCTAGAGGCTGCAGAGAGAGTTGCCAAGGGGGATCTTGATTCTGCTTTCGCAATTGTGAGGCCTCCTGGGCATCATGCGGAAGAGAATGAGCCAATGGGTTTTTGCTTATTCAATAATGTAGCTATCGCAGCTAGTTATCTGCTGAATGAAAGAGTAATAGCCTCGAGCTCTGATTCTGAAACTGATGATACTGAGGACGCTTTGAAGGATATTATACAACCACTCTCGGAACTGAAGGTTGATGAGGACCAAGGTCAGAAGGGCAATACTTCAGCCATGTGGAGACCAGAGCTCAGATTGGTTGATGTGTGGTATGCAACCTTTGGTTCTAATATGTGGAAGCCAAGATTTCTCTGCTATATCCAAGGTGGACAGGTGGAAGGTATGCAAAAGTCTTGTTCTGGTTCCATGGATATAAGCCCACCAAAGGATGTCTTGTGGAAGAATATCCCTCATAGATTATTCTTTGGCTATGATTATACCCAAACGTGGGGTCCTGGAGGAGTTGCTTTCCTTCATCCTGAAAGTAAAGCACAGGATAAAGCTTACATCTGCATGTATAAAATTACGCTAGAGCAGTTTAATGATGTTCTATTTCAGGAGAACAGGTTAAGCTGTGACAGTAATTTTCCTCTGTTTGATTTAGAAGCTCTGAAAACCATCAATAGTACAGGATCAGTCTCTTTAAAAGCTGTTAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12660.p1 GENE.R_Transcript_12660~~R_Transcript_12660.p1 ORF type:3prime_partial len:354 (+),score=68.93,Hist_deacetyl|PF00850.15|2.5e-33 R_Transcript_12660:116-1174(+)
MEGEAKSERVTKRVGLVYDERMCKHDTPDGDEHPESPLRIRAIVKKLLDSGLLSRCALLNAKEAEDKFIELVHSKYHVDLIKNISSKQFDSRRDRIASKFNSIYLNKGSSQAAYLAAGSVLEAAERVAKGDLDSAFAIVRPPGHHAEENEPMGFCLFNNVAIAASYLLNERVIASSSDSETDDTEDALKDIIQPLSELKVDEDQGQKGNTSAMWRPELRLVDVWYATFGSNMWKPRFLCYIQGGQVEGMQKSCSGSMDISPPKDVLWKNIPHRLFFGYDYTQTWGPGGVAFLHPESKAQDKAYICMYKITLEQFNDVLFQENRLSCDSNFPLFDLEALKTINSTGSVSLKAVK

Click here to download the sequence:
Link to NCBI Protein BLAST