Transcript Information: R_Transcript_126613.p1


Annotated TAIR IDAT5G48730.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19763152-19765136 | Forward length=508
E-Value5.5E-128
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2855329718494
Replicate 21.5117336299735
Replicate 33.756704965769
Condition 2: 8 Hour
Replicate 12.5465299545135
Replicate 22.8621928756718
Replicate 32.8316512567804
Condition 3: 24 Hour
Replicate 13.2140930118786
Replicate 20.79398932006078
Replicate 32.5389737436801


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_126613.p1 GENE.R_Transcript_126613~~R_Transcript_126613.p1 ORF type:complete len:250 (+),score=36.27,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|3.7e-11,PPR_2|PF13041.2|2.7e-05,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.00041,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.5e-07,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|4e-06,PPR_3|PF13812.2|66,PPR_3|PF13812.2|0.00056,PPR_3|PF13812.2|0.0026,PPR|PF01535.16|1e+04,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00028,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.11,PPR|PF01535.16|0.001,PPR|PF01535.16|2.1e-05 R_Transcript_126613:473-1222(+)
ATGAACGCATCACTGCTCTCCGTTGGGAGTCTGCTCTCAAGGTTTGCAGAGATGGAGTCAACACTAGCAGAAATGCTCTGTAATCAGTATTGTGAACCCGATGTATGGACCATGAATTCCACTCTTCGAGCTTTTGGAAGCAATGGTCAAATTGAAATGATGGAGAAGTGTTACGAAAAATTTCAGGGTGCAGGAATTGAACCCAACATCAGAACCTTCAACATACTCCTCGATTCATATGGCAAAACTGGTAATTATGAAAAGATGAGTGCAGTGATGGAATACATGCAGAAATATCACTACTCGTGGACAATCGTGACCTATAATGTAGTGATAGATGCCTTTGGCAGAGCTGGAGATTTGAAGCAGATGGAGTACTTATTTAGGTTAATGCAATCAGAAAGGATAAAACCAGATTCTGTCACATTCTGCTCGCTTGTGAGGGCTTATGGCCGAGCTGGGAAAGCGGAGAAAATTGGAAGCGTTTTACGAATCATCAATAACACAGATGTGATGTTGGATACTGTGTTCTTCAACTGTCTGGTGGACGCATATGGGAGGATGCAACGGTTTGCAGAAATGAAAGAGGTTCTTGAGATGATGAATAGTAAAGGATGCAGGCCTGATAGTGTTACTTATAGAACAATGATGAAAGCTTATTCGAGTGCTGGAATGGTAAACCAGGCGAAAGAGTTGCGAGATCTTATGAAATCCTCGAAGGCATCTCTGTCTACGATGGAAGAAGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_126613.p1 GENE.R_Transcript_126613~~R_Transcript_126613.p1 ORF type:complete len:250 (+),score=36.27,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|3.7e-11,PPR_2|PF13041.2|2.7e-05,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.00041,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.5e-07,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|4e-06,PPR_3|PF13812.2|66,PPR_3|PF13812.2|0.00056,PPR_3|PF13812.2|0.0026,PPR|PF01535.16|1e+04,PPR|PF01535.16|0.12,PPR|PF01535.16|0.00028,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.11,PPR|PF01535.16|0.001,PPR|PF01535.16|2.1e-05 R_Transcript_126613:473-1222(+)
MNASLLSVGSLLSRFAEMESTLAEMLCNQYCEPDVWTMNSTLRAFGSNGQIEMMEKCYEKFQGAGIEPNIRTFNILLDSYGKTGNYEKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIKPDSVTFCSLVRAYGRAGKAEKIGSVLRIINNTDVMLDTVFFNCLVDAYGRMQRFAEMKEVLEMMNSKGCRPDSVTYRTMMKAYSSAGMVNQAKELRDLMKSSKASLSTMEEA*

Click here to download the sequence:
Link to NCBI Protein BLAST