Transcript Information: R_Transcript_12681.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value2E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.1603743222176
Replicate 22.886991307241
Replicate 33.2928435294469
Condition 2: 8 Hour
Replicate 10.61214662368113
Replicate 22.375843695626
Replicate 32.2689513275484
Condition 3: 24 Hour
Replicate 15.3089929214066
Replicate 22.3433712571238
Replicate 33.0095593944484


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12681.p1 GENE.R_Transcript_12681~~R_Transcript_12681.p1 ORF type:internal len:160 (+),score=51.66,CENP-F_leu_zip|PF10473.5|10,CENP-F_leu_zip|PF10473.5|1.3e-06 R_Transcript_12681:2-478(+)
GAGGAAGCCAGACAGTTAGGTGAACATGTGTCAGAACTAAGGGCACAGATTTCACAGCTCGAGACAACTTCAAAAGAGAAAGAAGGGGAGATATCTTTGCTCCTAAAGGAGCTGCAGGAGAATCAAAACGAGTTGAATTCCACAATTGAAGGCTTGAGAATACAGGTCAATCATTTAACACATGAGGCAGAAACAGTGCATGCTGAGAGAAGTAAAGTAGAGGAACAAATGGCTAGCAGACATGTTGAAGTATCAGCCCAGGTCAAGGAATTGCAGGACCGGATCAGTGGGTTGGAGCATGAATTGGAGACCTTGGAGGTACAAGGCAGAGAGATGAAGTTGGAACTTGAGAGAAAAACTGACGATGTTGCAGAGTACCTAGTTCAGATAGAAGGTATGCATGAGAAAATAACTAGCAGTGATGCTGAAATGAAGAGTCTTTTTGAGGAAAAGGAAGACCTAGCAGCCAAGTTAAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12681.p1 GENE.R_Transcript_12681~~R_Transcript_12681.p1 ORF type:internal len:160 (+),score=51.66,CENP-F_leu_zip|PF10473.5|10,CENP-F_leu_zip|PF10473.5|1.3e-06 R_Transcript_12681:2-478(+)
EEARQLGEHVSELRAQISQLETTSKEKEGEISLLLKELQENQNELNSTIEGLRIQVNHLTHEAETVHAERSKVEEQMASRHVEVSAQVKELQDRISGLEHELETLEVQGREMKLELERKTDDVAEYLVQIEGMHEKITSSDAEMKSLFEEKEDLAAKLK

Click here to download the sequence:
Link to NCBI Protein BLAST