Transcript Information: R_Transcript_12682.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeOrtholog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value1.2E-116
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.584079347041
Replicate 213.933734460406
Replicate 318.354623835021
Condition 2: 8 Hour
Replicate 110.11130065734
Replicate 212.964011714671
Replicate 313.634391204375
Condition 3: 24 Hour
Replicate 117.600287947583
Replicate 214.234387688723
Replicate 314.006534813311


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12682.p1 GENE.R_Transcript_12682~~R_Transcript_12682.p1 ORF type:complete len:1097 (+),score=357.59,CENP-F_leu_zip|PF10473.5|1.7e+03,CENP-F_leu_zip|PF10473.5|6.1,CENP-F_leu_zip|PF10473.5|2.4,CENP-F_leu_zip|PF10473.5|0.0037,CENP-F_leu_zip|PF10473.5|2.2,CENP-F_leu_zip|PF10473.5|1.5e-06,CENP-F_leu_zip|PF10473.5|0.079,CENP-F_leu_zip|PF10473.5|3.4e+03,CENP-F_leu_zip|PF10473.5|1.1e+02,CENP-F_leu_zip|PF10473.5|2e+02,CENP-F_leu_zip|PF10473.5|33,CENP-F_leu_zip|PF10473.5|7.7,KIP1|PF07765.8|9.7e-10,KIP1|PF07765.8|2.5e+03,KIP1|PF07765.8|1.4e+03,KIP1|PF07765.8|8.3e+02,KIP1|PF07765.8|3.2e+03,KIP1|PF07765.8|4.5e+03,KIP1|PF07765.8|5e+03,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|2.4e+03,KIP1|PF07765.8|2.8e+03,KIP1|PF07765.8|97,KIP1|PF07765.8|2.6e+02,KIP1|PF07765.8|7.4e+03,ATG16|PF08614.7|0.032,ATG16|PF08614.7|0.0001,ATG16|PF08614.7|6.7,ATG16|PF08614.7|0.52,ATG16|PF08614.7|6.2,ATG16|PF08614.7|2,ATG16|PF08614.7|4e+03,ATG16|PF08614.7|4.2e+03,ATG16|PF08614.7|71,ATG16|PF08614.7|4.7,AAA_13|PF13166.2|0.044,AAA_13|PF13166.2|13,AAA_13|PF13166.2|0.0018,AAA_13|PF13166.2|2,AAA_13|PF13166.2|0.62,Reo_sigmaC|PF04582.8|0.74,Reo_sigmaC|PF04582.8|49,Reo_sigmaC|PF04582.8|0.31,Reo_sigmaC|PF04582.8|6.5,Reo_sigmaC|PF04582.8|2.5,Reo_sigmaC|PF04582.8|0.34,Reo_sigmaC|PF04582.8|8.8,Reo_sigmaC|PF04582.8|0.0044 R_Transcript_12682:191-3481(+)
ATGGGAAAGAAAGATCATCATGTGAGGAAACTAATGTCCTTTTTTGAAAAGCATGCTGATCCTGAGAAACATGAGAAGCTGAAAGAAAGCAGAAAAGATTTAGAGGAGAAGAAGAAAAAGATATTGAATCTTATGGAAAGCCATGATGAAAATGATGGAAGTCAAATTCATGAATCCAAAAAAGGGCACATCACGGAGCTCATTGAGGAATTCCATAAACACTATGAATCGCTTTTTTCTCACTATGATCATCTCACCGGGAAACTCAAGGACAAAGTTCACAAACAGCAGCTAAAGAAAGAGACTTTCTCTTCTGATTCAGACTCAGGCTCGGACTCTGAGTCTGACCATTCCACCAATGGCAAAGAAGCCAAAAATGGAAAAGTCGAAAACCATATTTCTGCAGCGATTGATGGGCTCCAGAAAGATCTTGAAGCAGCAACCACAGAGGTCACAGACCTCAAGAACAATTTGACAGCCGTAAGCAACGAGAAAGCTGCTCTTGAATCAGACTATACGACAATGTCAAGCAAGCTAGAGAGTTCTGAAAAAATTGTCGAAGAATTAAAGTCAGAAGCTGAAAGATTAAATCAAGAGAAATCAGAGGTGGTGGGAGAGAACGAAGAACTAAGAATGAGAGTAGAGTGTGCAGCTAAGACAGAAGTTGGATTGAATCAACAAATTGAAGAACTGAAAAAGGAGAGAGATGATGCAAAAGAAGATGCCATGAAAAGGGCTAAAGATGGAGCTCAAAGTGTTGAAAACTTTAGAACCCAGGTTGAGCAGTTGCAGAGCGAGAAACAGAGCCTCGAGCTTGAATTGGGAACTGTGAAGCAAAAAGTTTGTGCTCTAGAAGAGGAATTGTCCTCGGCAAAAGAGGAATCAGAGATCATGAGTAAGTCTATGGAAGCTGCTAAACAGGAAAATATTACTCTCTCTGAGAAAATTTCAGAGGTGACTGATGAACTTAAGCGTGCACAGAACACCATAGAAGAGCTGACAACAGAATCTGGCAGTTCCAAAGAAAGATTGGTTCAGAGGGAAAAAGACTTCTCATCCCTGCAGGAGACGCATGAAGCACATGTAACTGGTGCTTCAGTGCAAATAAAAGCATTAGAAGAACAGACAAGCAGCTTGAAGCTTGAGCTAGACATGCTAATGGAACAGAAAAGAGAGATGCAAGAGCAGTTTGATAGTAAAGCTGAGGAAGCCAGAAAGTTAGGTGACCATGCGTCAGAACTGAGGGCACGGTTTTCACAGCTCGAGACAACATCAAAAGAGAAAGAAGACGAGATATCTCTGCTCCAAAAGGAGCTGGAGGAGAATCAAAACGAGTTGAATTCCACAATTGAAGGCTTGAGAATACAGGTCAATCATTTAACACAGGAGGCAGAAACAGTGTGTGCTGAGAGACGTAAAGTAGAGGAACAATTGGCTAGCAGAAATGTTGAAGTATCAGCCCAGGTCAAGGAATTGCAGGACCGGATCAGTGGGTTGGAGCATGAATTGGAGACCTTGGAGGTACAAGGCAGAGAGATGAAGTTGGAACTTGAGAGAAAAACTGACGATGTTGCAGAGTACCTAGTTCAGATAGAAGGTATGCATGAGAAAATAACTAGCAGTGATGCTGAAATGAAGAGTCTTTTTGAGGAAAAGGAAGACCTAGCAGCCAAGTTAAAGGACAAAGAACTAGAGTTAGAGACACTTAACAGCCACAAGATGGGGCTGGAAGAGCAAAACAAGACTAGGAGCAACGAGGCCACTCAATTAAGAGAGGAAATTTCGAGTTTGCAAGGCAGGGTTCTTGAGTTGGAGAAAGAAACACAAGAGAGAGAGGAGAATTCTTCTGCCCTACAGAGAAAGCTTGAGGAGGGGGAGACTGAAGCTTCTTCAAAGATTATAGCGATGATGGCAGAAATAAGCAATTTAAAACAGGAGCTGGAAACAGTTCAGACTGTAAAAGGACAGTTGGAGGCACAAATCGAGAATGAGAAACAAGAATCTTCAAGTAGTTTGAGCCGGCTTGAAAGTGAGAATACTCAATTGAAAAACAAAATTGAAGATCAGATGATGATGCTTATAGACCTGAAGGATGAATTGAATGAGAGGAGAAAGCAGTGCGAACAACTTGAAGGCCAGGTTCTCGAATTGGAGAAAGCCGTGGAAGATAGAGGATGTGAGTCTTCTACTCTGCAGAGAATGCTTGAGGATGGACAAAGTGAAGCAACTTTGCAGATTACAGCCCTGATGACAGAAATTAAGAATTTGAAGGATGAGTTGGAAGCCATTCAGGCTGTAAAAAGCCAGTTGGAAGAACTATTAGAGAAGGAGAAACAGGAATCTTCTGAGAATTTGACTCAACTGGGAAGCGAGAATGCAGAATTGAAAAGCAAAATTGAAGAGCAGCTAAGGATGCTGAATGAACTGGAGGATGCATTTAATCTGAAAAAAGAGCAGCATGAACAACTTGAAGGCCGGTTACAAGAGAGTGAGGCAGATCTGCAAGCAGCACAAAGCAAGATTGAGAAACTGACAGAATCCTTGAGCATGAATGCCGAGTCAAAAGATGAGATTGTTGAAGAGATGGAAAGGACAATTGAAGACCTGAAGAGAGATTTGGAGGCAGCCGAAGATGAAGCTAATACTGCCATGGAGAAAACTAGGACAATTGAAGTCCAACTTCGGCTATCAAACCAAAAGCTCCGGGTTACAGAACAGTTGCTGACTGAGAAAGAAGAGAGCTACATGGCTGCAGAAAAGAAGTACCAGGAGGAGTGCAAGCTGCTAGAAGACAAGATCGTCAAACTTTCGCACATACTTGCAGCCAACAATGCAGCATATTGTGGAATGATCATGGATATCTCAGAGAATGTAAACAATTCACTCACTGGAATGGAGTCCATGACCAGGTATTTTGAGGAGGACCATGACAAGTTGTCAAACAACATCACCAAGATATCAGAAGAGATTCAGATTGTGAAGCATTGTTTAGCAGGAAAGAATATCGAGAGAGAACGGTTGGAGAAGGAGCTAGGCGATGTAAATGAGAGTTTCAAGAAGCAACATCAAGAGATGGAGTTGTTGCAACGAGCAGTTGGCCAGCTGATGAAGGGGGTAGGAGAGCTGGATATGACATTGAAAGAGAAGGATGAGAGACTTTCAACCCTTGGAGAGGAGAAACGTCAGGCCATAAGGCACCTGTGCTTGTGGAGCGATAATCTGCAGAGTCGCTATGATGAACTAAAGAGCATTGTGTCAAAGGCAGCTTCACATAGGCGGCAGCGTACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12682.p1 GENE.R_Transcript_12682~~R_Transcript_12682.p1 ORF type:complete len:1097 (+),score=357.59,CENP-F_leu_zip|PF10473.5|1.7e+03,CENP-F_leu_zip|PF10473.5|6.1,CENP-F_leu_zip|PF10473.5|2.4,CENP-F_leu_zip|PF10473.5|0.0037,CENP-F_leu_zip|PF10473.5|2.2,CENP-F_leu_zip|PF10473.5|1.5e-06,CENP-F_leu_zip|PF10473.5|0.079,CENP-F_leu_zip|PF10473.5|3.4e+03,CENP-F_leu_zip|PF10473.5|1.1e+02,CENP-F_leu_zip|PF10473.5|2e+02,CENP-F_leu_zip|PF10473.5|33,CENP-F_leu_zip|PF10473.5|7.7,KIP1|PF07765.8|9.7e-10,KIP1|PF07765.8|2.5e+03,KIP1|PF07765.8|1.4e+03,KIP1|PF07765.8|8.3e+02,KIP1|PF07765.8|3.2e+03,KIP1|PF07765.8|4.5e+03,KIP1|PF07765.8|5e+03,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|2.4e+03,KIP1|PF07765.8|2.8e+03,KIP1|PF07765.8|97,KIP1|PF07765.8|2.6e+02,KIP1|PF07765.8|7.4e+03,ATG16|PF08614.7|0.032,ATG16|PF08614.7|0.0001,ATG16|PF08614.7|6.7,ATG16|PF08614.7|0.52,ATG16|PF08614.7|6.2,ATG16|PF08614.7|2,ATG16|PF08614.7|4e+03,ATG16|PF08614.7|4.2e+03,ATG16|PF08614.7|71,ATG16|PF08614.7|4.7,AAA_13|PF13166.2|0.044,AAA_13|PF13166.2|13,AAA_13|PF13166.2|0.0018,AAA_13|PF13166.2|2,AAA_13|PF13166.2|0.62,Reo_sigmaC|PF04582.8|0.74,Reo_sigmaC|PF04582.8|49,Reo_sigmaC|PF04582.8|0.31,Reo_sigmaC|PF04582.8|6.5,Reo_sigmaC|PF04582.8|2.5,Reo_sigmaC|PF04582.8|0.34,Reo_sigmaC|PF04582.8|8.8,Reo_sigmaC|PF04582.8|0.0044 R_Transcript_12682:191-3481(+)
MGKKDHHVRKLMSFFEKHADPEKHEKLKESRKDLEEKKKKILNLMESHDENDGSQIHESKKGHITELIEEFHKHYESLFSHYDHLTGKLKDKVHKQQLKKETFSSDSDSGSDSESDHSTNGKEAKNGKVENHISAAIDGLQKDLEAATTEVTDLKNNLTAVSNEKAALESDYTTMSSKLESSEKIVEELKSEAERLNQEKSEVVGENEELRMRVECAAKTEVGLNQQIEELKKERDDAKEDAMKRAKDGAQSVENFRTQVEQLQSEKQSLELELGTVKQKVCALEEELSSAKEESEIMSKSMEAAKQENITLSEKISEVTDELKRAQNTIEELTTESGSSKERLVQREKDFSSLQETHEAHVTGASVQIKALEEQTSSLKLELDMLMEQKREMQEQFDSKAEEARKLGDHASELRARFSQLETTSKEKEDEISLLQKELEENQNELNSTIEGLRIQVNHLTQEAETVCAERRKVEEQLASRNVEVSAQVKELQDRISGLEHELETLEVQGREMKLELERKTDDVAEYLVQIEGMHEKITSSDAEMKSLFEEKEDLAAKLKDKELELETLNSHKMGLEEQNKTRSNEATQLREEISSLQGRVLELEKETQEREENSSALQRKLEEGETEASSKIIAMMAEISNLKQELETVQTVKGQLEAQIENEKQESSSSLSRLESENTQLKNKIEDQMMMLIDLKDELNERRKQCEQLEGQVLELEKAVEDRGCESSTLQRMLEDGQSEATLQITALMTEIKNLKDELEAIQAVKSQLEELLEKEKQESSENLTQLGSENAELKSKIEEQLRMLNELEDAFNLKKEQHEQLEGRLQESEADLQAAQSKIEKLTESLSMNAESKDEIVEEMERTIEDLKRDLEAAEDEANTAMEKTRTIEVQLRLSNQKLRVTEQLLTEKEESYMAAEKKYQEECKLLEDKIVKLSHILAANNAAYCGMIMDISENVNNSLTGMESMTRYFEEDHDKLSNNITKISEEIQIVKHCLAGKNIERERLEKELGDVNESFKKQHQEMELLQRAVGQLMKGVGELDMTLKEKDERLSTLGEEKRQAIRHLCLWSDNLQSRYDELKSIVSKAASHRRQRT*

Click here to download the sequence:
Link to NCBI Protein BLAST