Transcript Information: R_Transcript_12684.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value5E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.953709820756
Replicate 29.2834882005946
Replicate 310.932761125436
Condition 2: 8 Hour
Replicate 18.0945008090067
Replicate 28.8242322968315
Replicate 38.8882886715531
Condition 3: 24 Hour
Replicate 110.530233893699
Replicate 27.8378192751638
Replicate 311.124742464828


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12684.p1 GENE.R_Transcript_12684~~R_Transcript_12684.p1 ORF type:complete len:484 (+),score=144.41,KIP1|PF07765.8|5.7e-11,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|1.9e+02,KIP1|PF07765.8|4.5e+03,KIP1|PF07765.8|3.7e+02,EzrA|PF06160.8|2e+02,EzrA|PF06160.8|7.4,EzrA|PF06160.8|2e-07,EzrA|PF06160.8|1.7,ATG16|PF08614.7|3.5e+03,ATG16|PF08614.7|0.0027,ATG16|PF08614.7|0.28,ATG16|PF08614.7|0.02,AAA_13|PF13166.2|0.15,AAA_13|PF13166.2|0.83,AAA_13|PF13166.2|0.00017,Reo_sigmaC|PF04582.8|2,Reo_sigmaC|PF04582.8|0.57,Reo_sigmaC|PF04582.8|0.0025 R_Transcript_12684:392-1843(+)
ATGGGAAAGAGAAATCATCATGTGAGGAGGTCACTGAAGTCCTTTTTTCAGAAGCATGCTGATCCTGAGAAACATGAGAAGCTGAAAGAAGGAAGAAAAGATATGGAGGAGAAGAAGAAAAAGATATTGGATCTCCTGGAAAGCCATGATGAAAATGATGGAAACCAAATTCATGAATCAAAAAAAGGGCCAATCACGGAGCTCCTTGAGGAATTCCACAGACACTATGAATCACTTTTTTCTCACTATGATCATCTAGCCGGGGAACTCAAGGACAAAGTTGACAAACATCAGCTGAAGAAAGAGACGTTCTCTTCTGACTCAGACGTAGGCTCAGACTCCGAGCATGGTGATTCCACCAATGGCAAAGATGGAAATGTCGAGAATGATATTCTTCCGTCTGCAGCAATAGATGGGCTCCAGAAAGAGCTTGAAGCAGTGAACACAGAGGTGTCGGACCTCAAGAACAAGTTGGCAGCCATAAGCAATGAGAAAGCTACTCTTGAATCAGACTATATGACAATGTCAAGCAAGCTAGAGAATTCCGAAAGAAGTGTTGAAGAATTGAAGGTAGAAGCTGACAGATTAGTGGCAGAGAACGAAGAACTAAGAATGAGAGTAGAGATTGCAGCTAAGACAGAAATTGAACTGAATCAACAAATTGAAGAACTGAAAAAGGAGAGAGATGATCTAGTCATTGCAAATGAAGATGCCATGAAAAGGGTTGAAGACAGGAACCAAAGTGTTGAAAGCTTCAAAACCCAGGTTGATCAATTGCAGATTGAGAAGCAGAGCCTCGAGCTTGAACTGGGGACCATCAAGCAAAACGTTTGTGATCTGGAAGAGGAATTGAACTCAGCAAAAGAGGAAACAGAGAACTTGAGAAAGTGTTTGAAGAAAGCTGTTGAAGAGGAAGACAAGTATCAGGAGGAGTGCAAAATGTTAGAAGACAAGATCAGCAGACTTTCTCACTCACTTGCAGCTAACCATGAAGGATATCGTGAAATGATTATGAATATCTCAGAGAACGTAAACAATTTACTCACTCAAATGGAATCCATCATGACCAGCCAGTTTGAGGAGGACCACGACAAGTTTTCTAACAACATTTTCAAGATATCCCAAGAGATTCAGGATGTAAAGCGTTGTTTAACAGGAAAGAATATCGAAAGAGAACAGCTGAAGAAGGAGCTAGGCGATGTAAATGATAGGGTCAAGAAGCAAAATGGAGAGATGAAGGAGTTGCAACGTGCAATTAGCCAACTGACGAAAGCAGCAGGAGAGCTCAATGTGACATTGAAGGAAAAAGATGAGCAACTTTCATCTCTTGCGGAGGAGAAACGCCAGGCCATCAGCCAACTGTGCTTGTGGAGCGATAATCTCCAGGGTCGCTATGATGAACTAAAGAGCATTGTGTCAAAGGCAACTTCAGAGAGGCGGGTGAGTAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12684.p1 GENE.R_Transcript_12684~~R_Transcript_12684.p1 ORF type:complete len:484 (+),score=144.41,KIP1|PF07765.8|5.7e-11,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|1.9e+02,KIP1|PF07765.8|4.5e+03,KIP1|PF07765.8|3.7e+02,EzrA|PF06160.8|2e+02,EzrA|PF06160.8|7.4,EzrA|PF06160.8|2e-07,EzrA|PF06160.8|1.7,ATG16|PF08614.7|3.5e+03,ATG16|PF08614.7|0.0027,ATG16|PF08614.7|0.28,ATG16|PF08614.7|0.02,AAA_13|PF13166.2|0.15,AAA_13|PF13166.2|0.83,AAA_13|PF13166.2|0.00017,Reo_sigmaC|PF04582.8|2,Reo_sigmaC|PF04582.8|0.57,Reo_sigmaC|PF04582.8|0.0025 R_Transcript_12684:392-1843(+)
MGKRNHHVRRSLKSFFQKHADPEKHEKLKEGRKDMEEKKKKILDLLESHDENDGNQIHESKKGPITELLEEFHRHYESLFSHYDHLAGELKDKVDKHQLKKETFSSDSDVGSDSEHGDSTNGKDGNVENDILPSAAIDGLQKELEAVNTEVSDLKNKLAAISNEKATLESDYMTMSSKLENSERSVEELKVEADRLVAENEELRMRVEIAAKTEIELNQQIEELKKERDDLVIANEDAMKRVEDRNQSVESFKTQVDQLQIEKQSLELELGTIKQNVCDLEEELNSAKEETENLRKCLKKAVEEEDKYQEECKMLEDKISRLSHSLAANHEGYREMIMNISENVNNLLTQMESIMTSQFEEDHDKFSNNIFKISQEIQDVKRCLTGKNIEREQLKKELGDVNDRVKKQNGEMKELQRAISQLTKAAGELNVTLKEKDEQLSSLAEEKRQAISQLCLWSDNLQGRYDELKSIVSKATSERRVSR*

Click here to download the sequence:
Link to NCBI Protein BLAST