Transcript Information: R_Transcript_127013.p1


Annotated TAIR IDAT5G46580.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18897510-18899645 | Reverse length=711
E-Value1.8E-249
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0115507990915
Replicate 20.89984144641277
Replicate 31.1219626577707
Condition 2: 8 Hour
Replicate 12.1987307299567
Replicate 22.418625995067
Replicate 32.8894400579391
Condition 3: 24 Hour
Replicate 10.98390602404446
Replicate 20.72017171887599
Replicate 31.786751403012


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_127013.p1 GENE.R_Transcript_127013~~R_Transcript_127013.p1 ORF type:complete len:490 (+),score=103.66,PPR_2|PF13041.2|0.0037,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|20,PPR_2|PF13041.2|3.9e-11,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|1.1e-07,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|8.8e-05,PPR|PF01535.16|15,PPR|PF01535.16|4.1e-07,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|9.2e-06,PPR|PF01535.16|1.7e+03,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|7.8e-07,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|7.1e-06,PPR_1|PF12854.3|4.2e+02,PPR_3|PF13812.2|5.7e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|1.2e+04,ECSIT|PF06239.7|39,ECSIT|PF06239.7|1.1,ECSIT|PF06239.7|0.32 R_Transcript_127013:147-1616(+)
ATGACAGCTCCCCTTACTATGTCAATGGATCTTCATTACAACATGACTGTTCCAACAAATGCTTCAGAACCCAAACACCCAAGTTTCTTCACTAAACAATCATCATCGAGACACCCACTAAGAAAATTCACCATCTTTTGCAATTCCTCTAAAACCCCACCTAAATTAGAAGAATCTCGTAACAAAAACCCTTCATTAGCTGAGCAACTTAAGCCACTTTCTGCAACTGTTCTTTCTGACAATACGAAAGACCAAGCTCAGCTTCTCACAAAGCCACCCAAGTCAACTTGGGTCAACCCCACTAGGCCTAAACCTTCTGTTTTATCTCTACAACGTCAGAAAAGATCATCTTATAGTTATAACCCTCAAATTAGGGACCTTAAGTTGTTTACCAAGAAGCTTAATGACTGTGATATTGTCTCTGAGGAGGGTTTCAATTCCATTCTTGAGGAAATCCCACATCCTATTAATAGAGATAGTGCACTTTTGATGCTTAATTCTTTGAGACAATGGCAAAAGACTTTGCTTTTCTTTAATTGGGTCAAGACCCAGAATTTGTTCCCTATGGAAACTATCTTTTATAATGTTACTATGAAGTCTTTGAGGTTTGGTAGGCAGTTTGAGCTCATTGAGGGCCTTGCTTATGAGATGATTGATAATGGGGTCGAGCTCGATAACATTACTTATTCGACAATTATTACTTGTGCTAAGAGGTTTAATCTCTTTGACAAGGCTGTAGAGTGGTTTGAGAGGATGTATAAGACTGGTTTGATGCCTGATGAGGTTACTTATTCTGCTGTTCTTGATGTGTATGCCAAAGTAGGGAAAGTTGAGGAGGTAATGAGTTTGTATGAGAGAGGACGGGCGAGTGGGTGGACCCCAGATCCTATTGCGGTTTCTGTGTTGTGTAAGGTGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTTTGTGTTGCAGGAGATGAGATCTCTTGGGGTTCAGCCTAATTTGGTTGTTTACAATACCTTATTAGAGGCATTGGGTAAGGCCGGAAAGCCTGGCCTGGCTAGGAGTTTGTTTGAGGAAATGATCGATTCAGGTGTTATCCCTAATGAGAAGACCTTAACAGCACTTGTCAAGGTGTATGGGAAGGCAAGGTGGAGTCGTGATGCTTTGGAGCTGTGGGAACGAATGAGGTCCACTGGGTGGCCAATGGACTTCATATTGTACAACACGTTGCTGAGTATGTGTGCAGACCTTGGATTGGAAGAGGAGGCAGAGAGGCTATTTGAGGATATGAAGCAGTCTGAGTTTTGTAGGCCAGATAGCTTTAGCTACACAGCTATGCTTAACATATATGGTAGTGGAGGGAAGGTTGATAGGGCAATGGAGTTGTTTGAGGAAATTTCTGAAACAGGTGTTGAGCTCAATGTCATGGGATGCACTTGTTTGATTCAGTGCTTAGGAAGGAGCAAAAAAAATCGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_127013.p1 GENE.R_Transcript_127013~~R_Transcript_127013.p1 ORF type:complete len:490 (+),score=103.66,PPR_2|PF13041.2|0.0037,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|20,PPR_2|PF13041.2|3.9e-11,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|5.9e-10,PPR_2|PF13041.2|1.1e-07,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|8.8e-05,PPR|PF01535.16|15,PPR|PF01535.16|4.1e-07,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|9.2e-06,PPR|PF01535.16|1.7e+03,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|7.8e-07,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|7.1e-06,PPR_1|PF12854.3|4.2e+02,PPR_3|PF13812.2|5.7e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|1.2e+04,ECSIT|PF06239.7|39,ECSIT|PF06239.7|1.1,ECSIT|PF06239.7|0.32 R_Transcript_127013:147-1616(+)
MTAPLTMSMDLHYNMTVPTNASEPKHPSFFTKQSSSRHPLRKFTIFCNSSKTPPKLEESRNKNPSLAEQLKPLSATVLSDNTKDQAQLLTKPPKSTWVNPTRPKPSVLSLQRQKRSSYSYNPQIRDLKLFTKKLNDCDIVSEEGFNSILEEIPHPINRDSALLMLNSLRQWQKTLLFFNWVKTQNLFPMETIFYNVTMKSLRFGRQFELIEGLAYEMIDNGVELDNITYSTIITCAKRFNLFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKVGKVEEVMSLYERGRASGWTPDPIAVSVLCKVFGEAGDYDGIRFVLQEMRSLGVQPNLVVYNTLLEALGKAGKPGLARSLFEEMIDSGVIPNEKTLTALVKVYGKARWSRDALELWERMRSTGWPMDFILYNTLLSMCADLGLEEEAERLFEDMKQSEFCRPDSFSYTAMLNIYGSGGKVDRAMELFEEISETGVELNVMGCTCLIQCLGRSKKNR*

Click here to download the sequence:
Link to NCBI Protein BLAST