Transcript Information: R_Transcript_127098.p1


Annotated TAIR IDAT3G08820.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2677122-2679179 | Reverse length=685
E-Value5.7E-280
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72688782563039
Replicate 20.27871195242873
Replicate 30.50678623000337
Condition 2: 8 Hour
Replicate 10.50560783076908
Replicate 20.4617291235643
Replicate 30.74962403742011
Condition 3: 24 Hour
Replicate 11.0835543234315
Replicate 20.87830676997874
Replicate 31.6787030143343


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_127098.p1 GENE.R_Transcript_127098~~R_Transcript_127098.p1 ORF type:complete len:678 (+),score=122.44,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|8e-09,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|6.6e-09,PPR_2|PF13041.2|4.1e-05,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|1.1e+02,PPR|PF01535.16|0.0018,PPR|PF01535.16|0.074,PPR|PF01535.16|0.0031,PPR|PF01535.16|9.3e+02,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.49,PPR|PF01535.16|0.074,PPR|PF01535.16|27,PPR|PF01535.16|8.1e+02,DYW_deaminase|PF14432.2|7.3e+02,DYW_deaminase|PF14432.2|1.4e-42,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|60,PPR_3|PF13812.2|5.7e+03,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|7.1e-05,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|9.3,PPR_3|PF13812.2|2.3e+02,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|9.5e+02,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|6.2e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|1.3e+02 R_Transcript_127098:137-2170(+)
ATGTATAAAGCTTTGGACCTCAAAAACTGCCTTGTTAATGGCTTACAATCCTTCAAACACCTTAAACAAGCTCAAGCTCTTATCTTTCGCCTTGGCTTAGCCCAAGAACATAACTTTCTGAATACCCTTTTAGGCCATTGCTTTAATTTTTGCAGTATTGACTATTCTAAACTTGTTTTCAACCAAGTTCAAAACCCCAATATATTTCTGTTCAATACCATGATAAGAGGCTTTGTTTCCTCCAATTTATGTGAAGAATCTATCCATTACTATCACTTGATGCGTTCACAAGGCTTGTTGCCTAATAATTTCACATTCCCATTTGTCCTAAAGGCTTGTGCAAGGATTTGTGATTATAATTTGGGTGTTAAGATTCATAATCTTGCAGTGAAACTGGGTTTTCATGGTGATGTGTATGTTAGTACAAGTTTGGTGGGTCTGTATGCAAAATGTGGATGTGTGAGTGATGCCCACCAGGTGTTTGATGATATTCCTGACAAAAATGTGGTTTCTTGGACTGCTATTATTGGTGGGTATATAGATGCTGGCCAGTTTCAGCAAGCTGTGGACTTGTTTAGGAGTTTTTTGGAGACGGGTTTGAGGCCGGATGCTTTTACTCTTGTTAAGATTGTGTCTGCTTGTTCTGAACTAGGGGAACTTGAAATGGGTGAGTTTGTTCACAGATATATTGTTATGAATGGGATGGGAGTAAATGTCATTGTGGGTACCTCTTTGATTGACATGTATGCCAAATGTGGGAGTATGGAGAAAGCGCGCTGTGTCTTTAATAAGATGCTTGAAAAGGATGTAGTTACATGGACTGCTATGATTCAGGGGTATGCTGCCAATGGTTTCCCAAAGGAAGCATTAGAGTTTTTCTTTAGAATGGAGAAAGAGAATGTGAAGCCTGACTGTTATGCACTGCTTGGAGTTTTATCTGCTTGTACTAGGCTAGGGGCTATCGATTTGGGAGAATGGGCATGTACTTCTTTTAATAGGAATGAGTTGATTGACAATCCTGTCCTGGGAACAGCCTTAATTGATATGTATGCAAAATGTGGGGACATGGCATCAGCATGGAGAGTTTTTAAAGAGATGAAGGATAGAGACATTGTTGTTTGGAATGCTGCAATATCCGGTCTATCAATTAATGGCCATATCAAGTTTGCATTTGCCCTTTTTGCCCATATGGAGAAGCTTGGGGTTCAACCTAATGGTAACACTATCCTTGGACTACTTTGTGGCTGTACCCATGCTGGTCTTGTTGATGAAGGGAGGAGTTATTTTAACAGCATGGAGAGTGTTTTTTCAGTGACGCCAACTGTTGAGCATTATGGCTGTATGGTTGATCTTCTGAGCCGTGCTGGTCTGTTACAGGAAGCTCATCATTTGATCAAAAGCATGCCAATGGAGCCGAATGTCATTGTGTGGGGATCATTGCTTAGTGGATGCAGATTACATCGGGATACCCATCTGGCTGAACATGTGTTAGAGCAGTTAGTCCAGTTGGAACCTTGGAATACGGGAAATTATGTTCTCTTGTCAAATATCTACTCTGCAAACAATAAGTGGTATGATGCAGAAGTAACTAGAGCGAAAATGAACGAGGAAGGGATGCAAAAGACACCAGGCTACAGTTGGATTGAAGTGGGTGGCATAATTCATGAATTTGTAGCGGGAGACAAGTCACATCTTATGTCGGATCAGATATATGCAAAATTAGGTGAATTGTTGAAGGATTTGAGAGCATCTGGTTATGTACCGACAACAGAACTTGTTTTGTTTGATGTAGAGGAGGAGGAGAAGGAGCATTTTCTTGGTTATCATAGTGAGAAGTTGGCTATTGCTTTTGGCTTAATCAGCACTCCACCACACAATGTGATCAGAGTCGTGAAAAACCTCCGTGTCTGTGGTGATTGTCATTTGGCAATCAAGATTATTTCGAAAATCACTGGCAGAGAGATTGTAGTTAGAGATACAAACCGATTCCATCATTTTGTTGATGGTTCATGCTCTTGCAAAGATTATTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_127098.p1 GENE.R_Transcript_127098~~R_Transcript_127098.p1 ORF type:complete len:678 (+),score=122.44,PPR_2|PF13041.2|5.1e-08,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|8e-09,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|6.6e-09,PPR_2|PF13041.2|4.1e-05,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|1.1e+02,PPR|PF01535.16|0.0018,PPR|PF01535.16|0.074,PPR|PF01535.16|0.0031,PPR|PF01535.16|9.3e+02,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.49,PPR|PF01535.16|0.074,PPR|PF01535.16|27,PPR|PF01535.16|8.1e+02,DYW_deaminase|PF14432.2|7.3e+02,DYW_deaminase|PF14432.2|1.4e-42,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|60,PPR_3|PF13812.2|5.7e+03,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|7.1e-05,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|9.3,PPR_3|PF13812.2|2.3e+02,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|9.5e+02,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|6.2e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|1.3e+02 R_Transcript_127098:137-2170(+)
MYKALDLKNCLVNGLQSFKHLKQAQALIFRLGLAQEHNFLNTLLGHCFNFCSIDYSKLVFNQVQNPNIFLFNTMIRGFVSSNLCEESIHYYHLMRSQGLLPNNFTFPFVLKACARICDYNLGVKIHNLAVKLGFHGDVYVSTSLVGLYAKCGCVSDAHQVFDDIPDKNVVSWTAIIGGYIDAGQFQQAVDLFRSFLETGLRPDAFTLVKIVSACSELGELEMGEFVHRYIVMNGMGVNVIVGTSLIDMYAKCGSMEKARCVFNKMLEKDVVTWTAMIQGYAANGFPKEALEFFFRMEKENVKPDCYALLGVLSACTRLGAIDLGEWACTSFNRNELIDNPVLGTALIDMYAKCGDMASAWRVFKEMKDRDIVVWNAAISGLSINGHIKFAFALFAHMEKLGVQPNGNTILGLLCGCTHAGLVDEGRSYFNSMESVFSVTPTVEHYGCMVDLLSRAGLLQEAHHLIKSMPMEPNVIVWGSLLSGCRLHRDTHLAEHVLEQLVQLEPWNTGNYVLLSNIYSANNKWYDAEVTRAKMNEEGMQKTPGYSWIEVGGIIHEFVAGDKSHLMSDQIYAKLGELLKDLRASGYVPTTELVLFDVEEEEKEHFLGYHSEKLAIAFGLISTPPHNVIRVVKNLRVCGDCHLAIKIISKITGREIVVRDTNRFHHFVDGSCSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST