Transcript Information: R_Transcript_127280.p1


Annotated TAIR IDAT1G24050.1
Annotated Gene NameRNA-processing, Lsm domain
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:8507057-8508439 | Forward length=188
E-Value4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.43526291507406
Replicate 20.25841600512367
Replicate 30.42289361715974
Condition 2: 8 Hour
Replicate 10.43321145675895
Replicate 20.37841492346622
Replicate 30.87965497621875
Condition 3: 24 Hour
Replicate 10.60043495826303
Replicate 20.42413959404956
Replicate 30.69030453243292


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_127280.p1 GENE.R_Transcript_127280~~R_Transcript_127280.p1 ORF type:complete len:1300 (+),score=283.03,PCNA_N|PF00705.14|0.0054,PCNA_N|PF00705.14|26,PCNA_N|PF00705.14|0.26 R_Transcript_127280:563-3901(+)
ATGGCCGAAACTTCAAGAGAACAATCTGTGTCCGAATCCTTAAACGGGTCTACAATGGCCAAAACTTTAAGAGAACAGTCTGTGCCCGAATCCTTAGACAGGTCTGCAATGGATGCCACTTCTGTGATTGATACTTCAGGAACTTCTTACAGTTTCAGGTTTCAAATACACCCTGCTAGTAAACTGAAGCATGCCCTTGAAGTTCTGAGTGACGACGATTTTAATCCTCAAGGTTCTGGCCTTATCAAAGTGGGGCCTAATGGAGTGGAGATTAAAGCTTTGAACATTGAAACAAGGGTCCTTTGTTGTCTGGAAATGGGAGCTTCTGGTTTCGTCAACTTCTCTTACAATGAGCCTTTTAACAAGATGGTTGACTTGAATAAGATATGCAACGATCTTAACCTTTGTGATGATGGCAGTGTGATCAACATTCAGCATGCTTATGGGTCTGATGAGCTTACCTTCACATTTGGAGAATCTTGTCCTAGAGAGTTTGCTGTGGAATTGGCTGAAATGAATGATGACTTTGAAAAGGTTCCATTCATCACCCATACATATGAGTCTGTTGTAAACTGTGAAGCTTTGAGGGAGATAATAAATCATGTAGAGGCCAGTACATCTAAAGCTGTTTTTTTTAACATAGCTGATGGCATTATGTCCATCAAAATTGAAGATCAAGAATGGACTTGTGACTATGAGAAGAAAGTTTCAGCTAGGGTCATAAAACCATGGCAGAAGCATCGTGCACGGTTCCCTTGGCTTCACTACAAATCATTGAGGAAGGCATCATATCTGGATCGACGGGTTCTTTTGTGCCTAATTACAGATCCGCCCCATTGCATGATGTTGCGGTTCAGCTTTCATGACCTAGGGCATCTGGCGTTTGTAAAGGGAGCAGCTGTGATCCAGCCTAGTGTTGTTCCAGGAATGAAAGAGAAGCCAACCCACAGCTTTAGCTTACAACTATACCCTGCTAGCATATTGACAAACGCACTGAATGTTCTAAGCTATCTCTGTTTCAAGCGACATGATTCTGGCATTATCACAGTAAATCCCTCAGAAATGGAGATTGTTACAGGGCTGAATGAAGGAATGAAGATCATAGGTGGTCTGTCCTTGACAGATATTGGTTCCATCAGTTTCAATTGCTACAAGCCAATCAACATGAAGATTGTCAATCTTACTGATCTCTTCCTTGATGTTTCTGTCGCTCATTATGATGATATGATCGAAATTCACCATGTTGATGAGTCTGATGAGCTCCAAATTGTGCTTGGAAAAGTTCTTCCTAAAAGGATTGGTGTGAAGTTACATGACAAGAGTTCTCACTTTGGAGATATTCCCAGGGTCGGCTTTGCAATTAGCATTATTATACCGTCTGATGATCTGAGGCAGATCATTCAACATGTTGAAGCTAGCATATCTAAATCTGTTTCATTTCATGTAGCAAACATGAATGTGTCTATCAAAGCTGAAAGAAAAGTATGGAATTATGAGTATAATTACACGGATCCTCAAGCAGCAGGGAATGATTATCATGTGGGCTTCGAGATGCTTATGCCCCGGTATCCTCACTGTGTGTCATTGAAAGAGGCGTCATGGCTGGCTGATCGGTGTTTCGTGGGCCTTGTTACAATTCCTTTAAACTGTGTAGTTTTGCGGTTCAACATTGCAAAACAAATTCATATGATGTTTGTCATGGGAGCAAATTTGAAGCTCCCAAAATTCAGAAGTTTGGAAAATAGCCCAGAACCTTCAGAACAGGACTCTGAGGCTTTAAAAGACAGATCCATTGCTGAACTGTCAAACAGTGTATCAAAAGATGAACTATCTTCAAAGAAGAGCATGGAGCCTTCAACAGGTCAGCATGACACTCCACCGAATCCATCAAAAACCAAACGTCTGAAAGGTCCAGTTAAAACTAGACATACGACAAAGAATCGAAAACCTTCAAAACATCCCAAACCAAACAGGTTTAGTTTCCCAGCTGAACCTGAACCAGGAGAGCAACGAAGGAGCTATGGTATTGATGATGACAATAAAACTGACCCAACCATGGACAACCCTTTGAATGAGAACCCAGAACCCTTAAACCAGGACCAGTTACCTAAAATACATACATCTGAAACTTCAACTGATCCATCAATTGTCATATCTCCTAAAGAAAATGGTCCAGCCGCAGCTGAACCTTCAGAAGAGGATTCAGAGTCTCAGATGCAAAACCCTGAAGCTTTGCAACTTCCACACACTGAAACTTCAGGAGATAACAGTAAAGACTTTGTTGTTGGGTCCATTCTTGCAATCAAAACCACTTTAGGAGAGGAATTTGAAGGCCGAGTTATCACCTTCGACCGACCCTTCAACATCCTTTTGCTTCAAGAGGGTTCAGAATCGGGACCAAATAAAAAAAACATAAGGCTTCTGAACACCAATTACATTGAGGAGTCTACCTTATTGCACCAATCAGAAGATCCTCTTGACCTCAAGACCTTCAATCTGGAAGCGTTATCTAAGACTAAGCTGAAAGAAGCAATCGAAGCTCTCAGGGATGCCAATTTCAATGAGCAAGGCAAGGGGGTAATTGAAGTTGGGCCTGAGGGATTGCAGATTACAGTCTCGAATATTGGATCAAAGGTTGTCGCATATCTACACTTGAAGGCTACGGGTTTTATCACATTCAATTACCAGAAGATAGTTGATCTGAATCAGATAGCCCAAAGTCTTTCGGTTGCTTCGGAGAATGATTCAGTTGCTATTCACCATGTTCATGGCTCGAATGAGCTCTCCTTCATGTTTGGAAAACGTCCCAGCAGAAAGTTTCCTGTAGAATTGCATGAAATTAATGGTAAGTTCGAGAAGGTTCCTGACATTACCTATGCTTGTGAAGCCTCTGTACCATCTGGAGTTCTGAGACGCATCATTGAAGAAGTTGAAGCCACTGCAACAAAAAATGTTAGATTTTCCATCTCAAAAGGCAATTTAGCTGTCAATGATAAGAAAGTTTGGACGTTTAAGAGTGCCATAAAGGACAGTAGGGCTAAGCTACGCAAGAGGCATAATACCAGTTTCAAGTGGCTTCACTGTGAGTCACTTGGGAAGGCATCTGCAGTAGCAGAAAAGGCTGTTTTGTGTCTTACCATGGAGCCCCCCAAGTGCATGATGATGTGTTTCCACATCCGAGACCAGGGGGATCTTGTCTACATCATGGGACATAACCTGATCCTTCCCAAATTTGCACTAGACAAGCAAACGGGGAGCTTTGGTGCTGAAGAATCAATTGTGGAACCAGGAGAGCAAAGCAGCAGCTCAGGTACTGGTGAACAAAACTCGAAACCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_127280.p1 GENE.R_Transcript_127280~~R_Transcript_127280.p1 ORF type:complete len:1300 (+),score=283.03,PCNA_N|PF00705.14|0.0054,PCNA_N|PF00705.14|26,PCNA_N|PF00705.14|0.26 R_Transcript_127280:563-3901(+)
MAETSREQSVSESLNGSTMAKTLREQSVPESLDRSAMDATSVIDTSGTSYSFRFQIHPASKLKHALEVLSDDDFNPQGSGLIKVGPNGVEIKALNIETRVLCCLEMGASGFVNFSYNEPFNKMVDLNKICNDLNLCDDGSVINIQHAYGSDELTFTFGESCPREFAVELAEMNDDFEKVPFITHTYESVVNCEALREIINHVEASTSKAVFFNIADGIMSIKIEDQEWTCDYEKKVSARVIKPWQKHRARFPWLHYKSLRKASYLDRRVLLCLITDPPHCMMLRFSFHDLGHLAFVKGAAVIQPSVVPGMKEKPTHSFSLQLYPASILTNALNVLSYLCFKRHDSGIITVNPSEMEIVTGLNEGMKIIGGLSLTDIGSISFNCYKPINMKIVNLTDLFLDVSVAHYDDMIEIHHVDESDELQIVLGKVLPKRIGVKLHDKSSHFGDIPRVGFAISIIIPSDDLRQIIQHVEASISKSVSFHVANMNVSIKAERKVWNYEYNYTDPQAAGNDYHVGFEMLMPRYPHCVSLKEASWLADRCFVGLVTIPLNCVVLRFNIAKQIHMMFVMGANLKLPKFRSLENSPEPSEQDSEALKDRSIAELSNSVSKDELSSKKSMEPSTGQHDTPPNPSKTKRLKGPVKTRHTTKNRKPSKHPKPNRFSFPAEPEPGEQRRSYGIDDDNKTDPTMDNPLNENPEPLNQDQLPKIHTSETSTDPSIVISPKENGPAAAEPSEEDSESQMQNPEALQLPHTETSGDNSKDFVVGSILAIKTTLGEEFEGRVITFDRPFNILLLQEGSESGPNKKNIRLLNTNYIEESTLLHQSEDPLDLKTFNLEALSKTKLKEAIEALRDANFNEQGKGVIEVGPEGLQITVSNIGSKVVAYLHLKATGFITFNYQKIVDLNQIAQSLSVASENDSVAIHHVHGSNELSFMFGKRPSRKFPVELHEINGKFEKVPDITYACEASVPSGVLRRIIEEVEATATKNVRFSISKGNLAVNDKKVWTFKSAIKDSRAKLRKRHNTSFKWLHCESLGKASAVAEKAVLCLTMEPPKCMMMCFHIRDQGDLVYIMGHNLILPKFALDKQTGSFGAEESIVEPGEQSSSSGTGEQNSKP*

Click here to download the sequence:
Link to NCBI Protein BLAST