Transcript Information: R_Transcript_129516.p1


Annotated TAIR IDAT1G18485.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6363172-6366084 | Forward length=970
E-Value2E-129
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0249571862267
Replicate 20.50170371365109
Replicate 30.65682401709398
Condition 2: 8 Hour
Replicate 10.84837524906823
Replicate 20.45416366941476
Replicate 30.73734141110294
Condition 3: 24 Hour
Replicate 11.1794333462261
Replicate 21.0803651308407
Replicate 31.4905605342332


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_129516.p1 GENE.R_Transcript_129516~~R_Transcript_129516.p1 ORF type:5prime_partial len:837 (+),score=145.79,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|2.1e-06,PPR_2|PF13041.2|0.73,PPR_2|PF13041.2|1.8e-09,PPR_2|PF13041.2|0.043,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.3e-07,PPR_2|PF13041.2|7.4e-06,PPR_2|PF13041.2|0.34,PPR_2|PF13041.2|2.3,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|0.14,PPR|PF01535.16|22,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.0029,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.00052,PPR|PF01535.16|0.05,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.025,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0031,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.00065,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.52,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|9.2e+03,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|5.9,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|3,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.97,PPR_1|PF12854.3|20,PPR_1|PF12854.3|7.6e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|0.072,PPR_1|PF12854.3|4e+02,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|6.7,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.00091,PPR_1|PF12854.3|27,RPN7|PF10602.5|32,RPN7|PF10602.5|1e+03,RPN7|PF10602.5|2e+02,RPN7|PF10602.5|0.14,RPN7|PF10602.5|2.1e+02 R_Transcript_129516:1-2511(+)
CTAGTACCCCTTCTGGTTTCCCTCCAAAAACCATTCAACACAAAAATTTCAACACCATCAACCTCTTCTATGTTCAATCATGCTCGTATTCATCTCCCTCTAGTCTCTTCCCTCTTCTCAAATCCAAACCCCTTACTATTCTTCTCAACAATATCCATTAAATCCTTTCATTTCTCTCAAAAAGTCCCTGACTTTCTCCCTCTCCTATCTTCCCTACAATCCCTCCAACAAAACAAGCAAGCCCATGCTCTCACTCTCACTTCCGGCCTCCTCCCTTCAAGTGTCTCAATTTGTGCTTCTCTCATTCTTAACTATGCCAAATTTGGTGACCCAAGTTCCTGTCCTTTTCTCTTCCAAAACTCCCTCCCCTTTTGTAAAACACCCTTTTTGTGGAATACCCTTTTGCGGGGTTACTCCAAAGCTGGGATCTTTGATGCTTTTCAGGTGTATAATTCCATGATTAGGGATGGTACTATGAGGCCTGATGATCATACTTTCCCTTCTGTGATCAAAGCTTGTGCTGATAATTTGTTTGGTATGAAGGGTAAAGAGGTTCATGGGTTTGTGATTAAGGTGGGTTTTGATTGGGATGTGTATGTGGGAAATACCCTTTTGTATTTTTATAGTTGTTGCTCTGATTTAGGGAGTGCACAGAAGGTGTTTGACGTAATGCCTGAGAGAGATGTTGTGTCTTGGAATTCTATGATTGGGGCGTTGGTTGCTAATAGGTGTGCTGAGGACGCGGTTGAGAGGTTTGTTGAGATGATGGGGTCTGGTTTTTTGCCGAACGTGGTTAGTGTAGTCAGTGTGTTGCCTGCGTGTGGAGCGCTCAAGGATGAGTTGATGGTGAGGGTGATTCATGGTTATGTCGTCAAGGTTGGGCTGTTTTGTCTAGTGGTGGTTGGGAATGCTTTGGTTGATGTGTATGCCAAGTGTGGAGAGCTTGAGAGGTCACGGCAAGTTTTTGAAGAAATAAAAGAGAAGAACACTGTGTCTTGGAATGCTATTATTACTGGTTTGGCTCATGCCGGATGCTACGGCGATGCCTTGAGGATGTTTAGGTTGATGATTGATTCAAAGGTAAAACCGGATGGTGTTACTATATCTAGTGTGTTACCGGTTCTGGTTGAACTGGAATGTTTCCCTGAAGGAAGAGAGATTCATGGACTTAGTGTTAGGAGGGAACTTGATTCAGACCTCTTCATTGCTAATTCACTGATTGACATGTATGCGAAATCAGGGCATTCGGTTAAGGCCTCTAGCATCTTTCACAAGATGAGTGTTAGAAATGTGGTAACATGGAATGCCATGGTTGCTAATTTTGCTCAAAATAACCATGAATTGGCTGCAATCGAACTCATGAGTCAAATGCAAGCTCTTGGAGAAACTCCTAATGCAGTAACCTTCACAAATGTTTTACCAGCCTGTGCCCGAGTGGGGGCTATCGGCTCAGGCAAAGAAATACATGCCAAATGTTTACAAAGTGGAGCTTCCATTGATATATTTATTTCAAATGCACTAATAGACATGTATGCTAAGTGTGGTTTCCTTGACCTGGCACGAAGTGTATTTGACACCTCCTCTAGAGACCAAATATCATACAATACGCTTATAGTGGGCTATTCACAAACGAGTGAATGCCCAAAGTCCTTGTACTTGTTGAAAGAGATGGGACTCATGGGTATAGAGCAGGATACTGTTTCCTTTGTTGGTGCTATTTCAGCTTGTGCCAATTTTGCTGCGTTGAAGGCAGGGAAGGAGATTCATGGGTTTATCATAAGACGGTTGTTTCACACACATTCTTTTGTTTGCAATTCACTCTTGGATCTCTATATGAAGTGTGGAAAAGTTGATACAGCTCAAAAAATATTCGAACAGATTCACCAGAAAGATACAGCCTCATGGAATACAATGATTTTAGGTTATGCAATGCTTGGTGAGTTTGAGATAGCAATCAATCTCTTTGAAGCCATGAGGGAAGATGCTGTGGACCATGATTCTGTTTCATTTATAGCAGTTCTATCAGCGTGTAGTCATGGGGGACTAGTTGAGAAGGGTAAGAAATACTTTGAAGAGATGCAGGCTAAAGGCGTACTACCATCACATATGCACTACACTTGCATGGTTGATCTTCTTGGTCGAGCAGGCCTGATGGAAGAGGCTGTAAAGCTTATCAAAGACCTTCCATTTGAAACCGATGCCAACATTTGGGGGGCTTTACTAGGGGCCAGCCGAATCCACGGGGATATAAAGGTAGCAAAATGGGCAGCTGAGCATCTCTTTGTGCTAAAGCCAGAGCATTCAGGATACTATGTTCTCCTTTCGAACATGCTTGCAGAAGCCGGAAGGTGGGATGAAGCAACAAGGGTTAGAGAACTCATGAAGTCCAAGGGTGCTAAGAAAGATCCTGCATATAGTTGGGTTCAGGTTCGTGATCAGGTTCATGCGTTTCTGGTCGGTGAATCTGCTGATGTCTCGGAGCTAGGTTCATCTCGGGCATATCCTGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_129516.p1 GENE.R_Transcript_129516~~R_Transcript_129516.p1 ORF type:5prime_partial len:837 (+),score=145.79,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|2.1e-06,PPR_2|PF13041.2|0.73,PPR_2|PF13041.2|1.8e-09,PPR_2|PF13041.2|0.043,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.3e-07,PPR_2|PF13041.2|7.4e-06,PPR_2|PF13041.2|0.34,PPR_2|PF13041.2|2.3,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|0.14,PPR|PF01535.16|22,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.0029,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.00052,PPR|PF01535.16|0.05,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.025,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0031,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.00065,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.52,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|9.2e+03,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|5.9,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|8.6e+02,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|3,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.97,PPR_1|PF12854.3|20,PPR_1|PF12854.3|7.6e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|0.072,PPR_1|PF12854.3|4e+02,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|6.7,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.00091,PPR_1|PF12854.3|27,RPN7|PF10602.5|32,RPN7|PF10602.5|1e+03,RPN7|PF10602.5|2e+02,RPN7|PF10602.5|0.14,RPN7|PF10602.5|2.1e+02 R_Transcript_129516:1-2511(+)
LVPLLVSLQKPFNTKISTPSTSSMFNHARIHLPLVSSLFSNPNPLLFFSTISIKSFHFSQKVPDFLPLLSSLQSLQQNKQAHALTLTSGLLPSSVSICASLILNYAKFGDPSSCPFLFQNSLPFCKTPFLWNTLLRGYSKAGIFDAFQVYNSMIRDGTMRPDDHTFPSVIKACADNLFGMKGKEVHGFVIKVGFDWDVYVGNTLLYFYSCCSDLGSAQKVFDVMPERDVVSWNSMIGALVANRCAEDAVERFVEMMGSGFLPNVVSVVSVLPACGALKDELMVRVIHGYVVKVGLFCLVVVGNALVDVYAKCGELERSRQVFEEIKEKNTVSWNAIITGLAHAGCYGDALRMFRLMIDSKVKPDGVTISSVLPVLVELECFPEGREIHGLSVRRELDSDLFIANSLIDMYAKSGHSVKASSIFHKMSVRNVVTWNAMVANFAQNNHELAAIELMSQMQALGETPNAVTFTNVLPACARVGAIGSGKEIHAKCLQSGASIDIFISNALIDMYAKCGFLDLARSVFDTSSRDQISYNTLIVGYSQTSECPKSLYLLKEMGLMGIEQDTVSFVGAISACANFAALKAGKEIHGFIIRRLFHTHSFVCNSLLDLYMKCGKVDTAQKIFEQIHQKDTASWNTMILGYAMLGEFEIAINLFEAMREDAVDHDSVSFIAVLSACSHGGLVEKGKKYFEEMQAKGVLPSHMHYTCMVDLLGRAGLMEEAVKLIKDLPFETDANIWGALLGASRIHGDIKVAKWAAEHLFVLKPEHSGYYVLLSNMLAEAGRWDEATRVRELMKSKGAKKDPAYSWVQVRDQVHAFLVGESADVSELGSSRAYPV*

Click here to download the sequence:
Link to NCBI Protein BLAST