Transcript Information: R_Transcript_129635.p1


Annotated TAIR IDAT1G52620.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19603828-19606287 | Forward length=819
E-Value2.3E-269
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2454921515549
Replicate 21.1508325441333
Replicate 31.3113479500842
Condition 2: 8 Hour
Replicate 11.4613975425274
Replicate 21.4162799704527
Replicate 32.5646611838793
Condition 3: 24 Hour
Replicate 12.8522488882166
Replicate 21.6118337800666
Replicate 32.2127642984318


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_129635.p1 GENE.R_Transcript_129635~~R_Transcript_129635.p1 ORF type:complete len:821 (+),score=139.19,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|9.2e-11,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|5.8e-10,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|1.5e-17,PPR_2|PF13041.2|1.5e-15,PPR_2|PF13041.2|3.9e-20,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|4.7e-05,PPR_1|PF12854.3|21,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.94,PPR_1|PF12854.3|4e-14,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|3.4e-09,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|9.7e-06,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|3.2e-06,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|1.8e-13,PPR_1|PF12854.3|3.4e-12,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|11,PPR|PF01535.16|0.23,PPR|PF01535.16|21,PPR|PF01535.16|0.063,PPR|PF01535.16|5.9,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|2e-07,PPR|PF01535.16|3e+02,PPR|PF01535.16|0.00024,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00019,PPR|PF01535.16|5.7e-07,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.0083,PPR|PF01535.16|2.4e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|8.9e+03,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.061,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|2.5e+03,MRP-S27|PF10037.5|0.73,MRP-S27|PF10037.5|1.1e+02,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|0.15,MRP-S27|PF10037.5|5,TPR_11|PF13414.2|5.5e+02,TPR_11|PF13414.2|1.8e+03,TPR_11|PF13414.2|82,TPR_11|PF13414.2|0.13,TPR_11|PF13414.2|2.8e+02,TPR_11|PF13414.2|3e+03,TPR_10|PF13374.2|1.7e+03,TPR_10|PF13374.2|0.82,TPR_10|PF13374.2|1.1e+02,TPR_10|PF13374.2|15 R_Transcript_129635:207-2669(+)
ATGTCCAAGAGACTCCTTTCTCTCATCAAACCTCGCCAAAACCCCAAACCCAATTCACCAAACAGAATTTACTATGAACCCCATATCAAGAGACTTGCCAATGAAGCGTGTCAATTGCTTAGAACCCATCAACATTGGGACCAAACCCTTGAAACCCTTCTCAATAAAGAGTCAGTTGATGCCTCTGAAATTGCCCATCTTGTATTCGATAGAATAAAGGACGTTTCTTTGGGTTTGAGGTTCTATGATTGGTTTATGGAAAGAAAGTTTTGTTCTTTCCTTGATGGGTATGCTTTTTCTTCCCTTTTAAAGCTCTTAGCAAAGAATAGAGTTTTTTCTGAGGTTGAAAATGTGTTAAGTTGCATGAAAAGTCATGGTCTTTTGCCTACTATTGAAGCTTTTGATATGTTAATTAGAGCTTATGCTGATGCATTGTTAGTTGATAAAGCTAGGGACTTTTATGAATTTGTGAGGGATACATACTGTTGTATGCCTAGTGCTATTGCAAGCAATTCCTTACTTATTGCTTTGGTAGAAAAGGGTCAATTTGTGGTTGCACGCCAGGTGTATGATGAAATGCTTGAGAGAGATTGTTTAGATAATTATAGTACTTGTATAATGGTGAGGGGTTTTTGTAAGCAAGGTAAAGTTGAGGACCGGGTCAAGTTGATTGAGGGTAGGTGGGGAAAGGGCTGCGTGCCGAATGTTGTGTTTTATAATACACTTATTGATGGGTATTGTAAGAGAGGTGATATTGGAAGTGCTAATAGGCTTTTACATGAGATGAAGTTCAAGGGGTTTTTACCTACTTTGGAGACCTATGGTGCTATAATAAATGGCCTTTGCAAAGATGGGAATTTTCAGGAGGTTGATAAACTTTTGGAGGAGATGAAGATGAGGGGTTTGAGGATCAATGTTCAGATTTATAATAATATAGCTGATGCCAAGATTAAACACGGTTGTGCAGTTGAACCTTTTGAGACGATAAGAAAACTCAAGGAGAATGACTGTAAGCCAGATATCATGACATACAACACCTTAATTTCTGGTTCATGTTCTAGAGGGAAAATAGAGGAATCCTGTGCTCTTCTTGAGCAAGCTATAAAGAGGGGTTTGAAACCTGATCAATATAGTTATACCCCTTTTGTTCATTTTTATTGTAAACAAGGGGACATGGATTCAGCCTCCTGTTTGCTCATCGAAATGACAGAGAGAGGTCATCCACCTGATATGGTTACTTATGGTGCTCTCGTCCATGGACTTGTTAGTAGAGGTGATATTGAAGCTGCATCAAGTATCCGGAAGAAAATGATGGGAAAGGGAGTTGTGCCTGATGCTGGAATCTACAATGTTCTAATGAGTGCGTTATTCAGAAGAGGGTTGCTCTCCGCTGCTAAGCAGTTGCTATGCGAGATGCTTGATGAAAATGTACATCCTGATGCATTCATCTATACTACTTTAGTTGATGGCTTTGCTAGAAATGGTAATATAAATGAGGCCGAAAATATATTTCAGCTTGCATTGGAGAAAGATTTGGATCCTGGTGTCGTGGGATACAATGCCATGATTAAGGGGTACTGCAAACTCAGAAGAATGAACGATGCAATCCTCTGCTTCAAGAAAATGGTAAAGAGACGACTCTCTCCAGATGAGTTTACTTATTCTACACTAATAGATGGTTATGTGAAGCAGCATGACTTGAATAATGCATCGACAATGTTCAGAGAGATGGTAGAAAGTAAATGTAAACCAAACATAGTGACATACACATCTCTTATTAATGGATATTGCCGTCAAGGAAATACTTCTGAAGCTGAAAAAAAATTCAGAGAGATGCAATCTCTTGGTCTGGTCCCTAATGTTATCACATACAGCATACTTATCGGTGGATTTTGCAAGGGGGGTAATCTTGTTAAAGCAGTATCTATCTTTGAAGAGATGCTAATGAATAAGTGCATTCCTAATGACGTGACATTTAATTACCTTGTAAATGGATTTGTGAATATTGTGCCTGCTGCCATTTATAACATAGGAAATGGACTTGAAAACCATGAAAAATCAATCTTTCTGAAATTCTTCAAACAAATGAGTACAAGTGGTTTGCCTTCAAGAAAATCTGTCTATAATTGTATTTTTATCTGCCTTTGTCAGCATCGGATGCTCTCAACTGCTTTGCAGCTGAGAAAGAAAATGATGAGTAGCAATGTTCTCGAAGATTCATTTACTTTTGTGGCCTTGCTCCATGGTATTTGCTTGGAAGGAAGGTCAAGGGAATGGAGAAATATAATCAAGTATGACTTGAATGAGGAAGGGATACATAATGCCATTAGCTACTTGAAAGTGTTGGACATGCACCTCCCAGACGGAATATCATATGAGGCTTCAGTCATTTTGCACCAGTTACGTAAGGATTGCAAGTTTAGTGACCATGAAGCAAATAATATTAAAGTTTCAGCAAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_129635.p1 GENE.R_Transcript_129635~~R_Transcript_129635.p1 ORF type:complete len:821 (+),score=139.19,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|9.2e-11,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|5.8e-10,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|1.5e-17,PPR_2|PF13041.2|1.5e-15,PPR_2|PF13041.2|3.9e-20,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|4.7e-05,PPR_1|PF12854.3|21,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|0.94,PPR_1|PF12854.3|4e-14,PPR_1|PF12854.3|2e-07,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|3.4e-09,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|9.7e-06,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|3.2e-06,PPR_1|PF12854.3|1.9e-07,PPR_1|PF12854.3|1.8e-13,PPR_1|PF12854.3|3.4e-12,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|11,PPR|PF01535.16|0.23,PPR|PF01535.16|21,PPR|PF01535.16|0.063,PPR|PF01535.16|5.9,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|2e-07,PPR|PF01535.16|3e+02,PPR|PF01535.16|0.00024,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.0017,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00019,PPR|PF01535.16|5.7e-07,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.0083,PPR|PF01535.16|2.4e+03,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|8.9e+03,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.061,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|2.5e+03,MRP-S27|PF10037.5|0.73,MRP-S27|PF10037.5|1.1e+02,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|0.15,MRP-S27|PF10037.5|5,TPR_11|PF13414.2|5.5e+02,TPR_11|PF13414.2|1.8e+03,TPR_11|PF13414.2|82,TPR_11|PF13414.2|0.13,TPR_11|PF13414.2|2.8e+02,TPR_11|PF13414.2|3e+03,TPR_10|PF13374.2|1.7e+03,TPR_10|PF13374.2|0.82,TPR_10|PF13374.2|1.1e+02,TPR_10|PF13374.2|15 R_Transcript_129635:207-2669(+)
MSKRLLSLIKPRQNPKPNSPNRIYYEPHIKRLANEACQLLRTHQHWDQTLETLLNKESVDASEIAHLVFDRIKDVSLGLRFYDWFMERKFCSFLDGYAFSSLLKLLAKNRVFSEVENVLSCMKSHGLLPTIEAFDMLIRAYADALLVDKARDFYEFVRDTYCCMPSAIASNSLLIALVEKGQFVVARQVYDEMLERDCLDNYSTCIMVRGFCKQGKVEDRVKLIEGRWGKGCVPNVVFYNTLIDGYCKRGDIGSANRLLHEMKFKGFLPTLETYGAIINGLCKDGNFQEVDKLLEEMKMRGLRINVQIYNNIADAKIKHGCAVEPFETIRKLKENDCKPDIMTYNTLISGSCSRGKIEESCALLEQAIKRGLKPDQYSYTPFVHFYCKQGDMDSASCLLIEMTERGHPPDMVTYGALVHGLVSRGDIEAASSIRKKMMGKGVVPDAGIYNVLMSALFRRGLLSAAKQLLCEMLDENVHPDAFIYTTLVDGFARNGNINEAENIFQLALEKDLDPGVVGYNAMIKGYCKLRRMNDAILCFKKMVKRRLSPDEFTYSTLIDGYVKQHDLNNASTMFREMVESKCKPNIVTYTSLINGYCRQGNTSEAEKKFREMQSLGLVPNVITYSILIGGFCKGGNLVKAVSIFEEMLMNKCIPNDVTFNYLVNGFVNIVPAAIYNIGNGLENHEKSIFLKFFKQMSTSGLPSRKSVYNCIFICLCQHRMLSTALQLRKKMMSSNVLEDSFTFVALLHGICLEGRSREWRNIIKYDLNEEGIHNAISYLKVLDMHLPDGISYEASVILHQLRKDCKFSDHEANNIKVSAS*

Click here to download the sequence:
Link to NCBI Protein BLAST