Transcript Information: R_Transcript_12979.p1


Annotated TAIR IDAT5G49540.1
Annotated Gene NameRab5-interacting family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20104804-20105609 | Reverse length=114
E-Value3.4E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1120.11625918589
Replicate 2105.11696208418
Replicate 3124.87866624999
Condition 2: 8 Hour
Replicate 191.308580254888
Replicate 293.050121210095
Replicate 3106.33330608588
Condition 3: 24 Hour
Replicate 1108.86444072492
Replicate 2109.28025050299
Replicate 3107.03793646883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_12979.p1 GENE.R_Transcript_12979~~R_Transcript_12979.p1 ORF type:5prime_partial len:155 (+),score=18.03,Rab5ip|PF07019.8|1.4e-19 R_Transcript_12979:1-465(+)
TGTTTACTTGACTTCCCAGTTCCCAGTTTCGAATCCGATCGTCACACCCGGCTTACTGTCAACTCTTCCTCAGGACGCGACTCTGTTGGCATAAGAGAAGGCATGGCTGGAAACAGTGATTCTGGTGCGTCTAACAAGAAATCTGGTGACACCTTGAATGATGTGTCAATCTTTAATGCTGAAAATATGCAGAGTAACATGAAAGTCGTAACCTACAGCCGGACATTCTTGTCAATTATTGGTGGAGTCACTGCAGGGATTTTGGGATTTACTGGACTTACTGGATTTATCTTTTATCTTCTGGTTATGGCCGTTACTTCAGTGGGTCTGACAGCCAAGGCTAAATTCTCAGTTCATTCATACTTTGATAGCTGGAACCGGGTGTTACTTGATGGTTTTCTTGGCGGGCTTATGTCGTTCGTGCTGTTTTGGACATTTGCTTATGATATTGTGCATATATTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_12979.p1 GENE.R_Transcript_12979~~R_Transcript_12979.p1 ORF type:5prime_partial len:155 (+),score=18.03,Rab5ip|PF07019.8|1.4e-19 R_Transcript_12979:1-465(+)
CLLDFPVPSFESDRHTRLTVNSSSGRDSVGIREGMAGNSDSGASNKKSGDTLNDVSIFNAENMQSNMKVVTYSRTFLSIIGGVTAGILGFTGLTGFIFYLLVMAVTSVGLTAKAKFSVHSYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF*

Click here to download the sequence:
Link to NCBI Protein BLAST