Transcript Information: R_Transcript_130342.p1


Annotated TAIR IDAT3G25690.1
Annotated Gene NameHydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)CHUP1
Annotation TypeHomolog
Chromosome Positionchr3:9354061-9357757 | Forward length=1004
E-Value1E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1837694343018
Replicate 21.0102822376043
Replicate 31.1980511295059
Condition 2: 8 Hour
Replicate 10.4098052710836
Replicate 20.28068052520317
Replicate 31.3290928278526
Condition 3: 24 Hour
Replicate 12.7856753539892
Replicate 21.3842212692831
Replicate 31.6484463780927


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_130342.p1 GENE.R_Transcript_130342~~R_Transcript_130342.p1 ORF type:3prime_partial len:478 (+),score=107.00 R_Transcript_130342:177-1607(+)
ATGAAGGAAGAAAAACCAACACCAAAAACGAACAGAATAACAAAAACATCGAAATTCTCGGATCAAAATGAGCCACCACCAAGAAGTACCAAATTAAAGTCAGCCTCTTCATGGGGTTCTCACATAGTGAAAGGCTTAGCAGGAGAAAGAAAAAGCAAGCTCCAAACTTGTTCAACATTACCCACTAAGAAATCACAACCTTCAACCATCACCAAAAAGAACAATAACAACAACGGTAATACTCCATCTAACAAAGTAAAGAGGGGTTTTATTGGTGACTTATCTTGCTCGGTAGCAGCAATTCAAGTCCATCCCCACTCCCAATGCCAAACCACCAACAAGTCATTGGGCTCTCGTGATTTATTCGTCGAGATAGAGAATTTAAGGGGCCTGTTGAAAGAATCAAAGGACAGAGAGTTTCAGTTACAGTCTGAGTTGTGTCAAAGTAAGAGGAACCAGGAGAGGGTTTTAGAGTTAGAGAAAGAGTTTGAAGCTAAGCAAAATGAGGTTCAGGAGCTTATGGTTAAAGTTAACTTGCTTGAAATAGAGAAAACCAATCTTAAGAAGGAATTATTGTCTTTGAATTCTGATTCAAGGAGCCATGAAAATGACATTCTTCTGAAAACCCAGAAATCTCATACCCTTATGGATGTGGTTGAACTTAGGCGCCTCAACAAGGAGTTGCTGCTTCAGAAAAGAGATCTTACTTGTAGAGTTGCTTCTATGGAGTTCCAGCTAGCCAATCTAGCCAAGCCCCCTGAGAGTGAAATCATCGCTAAGATAAGAGCAGAGGCATCCATGTTGAGGAATACCAATGAAGATTTGTCAAAACAAGTGGAAGGTCTACAGGTGAATAGGTTTAATGAGGTAGAGGAGCTAGCTTATCTACGATGGGTAAATGCTCAGTTGAGTAATGAGCTTCGCAACTCGTCCTGCTCTTGTAGTGCTTCTTCTAATGTAGGATCGAGTCCTTTTGCTATAAAGAAACTAAATAAATGGCCTATAGCTGTTACTGATGATAATGATCTGGAAGGGAATAATAGCTCGTCAAGAAGACACTCAATTAGTGGAAGTGGATCAAAGTCTTGTGATGAGGAGGATATTTTGGTGATAAATAAGAGAAGACAATCTAATGGGCTTAAGTGCACAAAAGCAATTGAATGTGGGGAACGAGAAGAGGAACTGAATTTTCATCAAAAGCATGAAGAAGCCAGGACTAAACTTGTTGTGGTCCCTTCAGATATTGAGAAGAGGGCTTTAAGAGTACCAAATCCGCCACCAAGACCTTCATGTGACAATTCAACTATTTGTAAGGAAGATCAAGCTTCTATAGCGGCACATCCCCCGCCACCTCCTCCTCCACCACCACCACCATCTCGGTTTTCAGTAGGCAATACTTGTTCTAGTGCTGTGCAGCGTGCACCACAGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_130342.p1 GENE.R_Transcript_130342~~R_Transcript_130342.p1 ORF type:3prime_partial len:478 (+),score=107.00 R_Transcript_130342:177-1607(+)
MKEEKPTPKTNRITKTSKFSDQNEPPPRSTKLKSASSWGSHIVKGLAGERKSKLQTCSTLPTKKSQPSTITKKNNNNNGNTPSNKVKRGFIGDLSCSVAAIQVHPHSQCQTTNKSLGSRDLFVEIENLRGLLKESKDREFQLQSELCQSKRNQERVLELEKEFEAKQNEVQELMVKVNLLEIEKTNLKKELLSLNSDSRSHENDILLKTQKSHTLMDVVELRRLNKELLLQKRDLTCRVASMEFQLANLAKPPESEIIAKIRAEASMLRNTNEDLSKQVEGLQVNRFNEVEELAYLRWVNAQLSNELRNSSCSCSASSNVGSSPFAIKKLNKWPIAVTDDNDLEGNNSSSRRHSISGSGSKSCDEEDILVINKRRQSNGLKCTKAIECGEREEELNFHQKHEEARTKLVVVPSDIEKRALRVPNPPPRPSCDNSTICKEDQASIAAHPPPPPPPPPPPSRFSVGNTCSSAVQRAPQV

Click here to download the sequence:
Link to NCBI Protein BLAST