Transcript Information: R_Transcript_130598.p1


Annotated TAIR IDAT5G15450.1
Annotated Gene Namecasein lytic proteinase B3
Annotated Gene Symbol(s)APG6, CLPB3, CLPB-P
Annotation TypeOrtholog
Chromosome Positionchr5:5014399-5018255 | Reverse length=968
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7689242376704
Replicate 26.1728253811891
Replicate 37.0427547267674
Condition 2: 8 Hour
Replicate 16.945266040937
Replicate 28.0091771398035
Replicate 39.3576626179635
Condition 3: 24 Hour
Replicate 19.7915285484618
Replicate 26.8266277518453
Replicate 38.6100701666884


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_130598.p1 GENE.R_Transcript_130598~~R_Transcript_130598.p1 ORF type:3prime_partial len:966 (+),score=239.59,AAA_2|PF07724.10|0.058,AAA_2|PF07724.10|2.1e-55,Clp_N|PF02861.16|1.4e-15,Clp_N|PF02861.16|4.2e-11,AAA|PF00004.25|3.6e-14,AAA|PF00004.25|2.7e-09,ClpB_D2-small|PF10431.5|5.9e+03,ClpB_D2-small|PF10431.5|1.1e-24,AAA_5|PF07728.10|0.00085,AAA_5|PF07728.10|7.1e+03,AAA_5|PF07728.10|7.7e-12,AAA_16|PF13191.2|6.5e-05,AAA_16|PF13191.2|5.4e+02,AAA_16|PF13191.2|0.018,Sigma54_activat|PF00158.22|0.089,Sigma54_activat|PF00158.22|2e-06,AAA_17|PF13207.2|0.82,AAA_17|PF13207.2|9.3e-05,IstB_IS21|PF01695.13|0.013,IstB_IS21|PF01695.13|0.057,AAA_14|PF13173.2|0.044,AAA_14|PF13173.2|0.13,AAA_22|PF13401.2|3.6e+03,AAA_22|PF13401.2|0.074,AAA_22|PF13401.2|4.4e+02,AAA_22|PF13401.2|1.1e+04,AAA_22|PF13401.2|0.29,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|4.9e+03,AAA_18|PF13238.2|0.066,AAA_18|PF13238.2|3.3e+03 R_Transcript_130598:363-3257(+)
ATGACAACCACAAACTTGGTTGCTAGAGGGCATCTCACACCAGCAAACACTGGGGTCAGAAATGCCTTATTCTCTCAACCCATTGTATCTTTTGGCCTTACTTTAAGACCCAGTTCAGTAAAGTTCATAAAAGCCTTGAAATTGGGTAAGAACTTCAACAATGTTTCTCTGAATAGGAGTTCTGGGGCTACCAAGAAGAATTCAAGGTCAGGGTCTTTTGTGGTCAAGTGTGAAGCTTCAACTGGGAGGATTACCCAGCAAGAATTTACGGAAATGGCATGGCAAGCAATTGTTTCTTCGCCAGAAGTGGCAAAGGAGAATAAGCACCAAATAGTGGAAACGGAGCATTTAATGAAAGCTCTACTGGAGCAGAAGAATGGGCTTGCTCGTCGTATTTTCTCCAAAGCCGGAGTTGACAACACCCGCTTGCTTGAAGCAACCGATAAGTATATACAACGACAACCGAAGGTACTGACTGAGTCTGCTGGTTCTATGTTGGGAAGAGATCTAGAAGCCCTGATTCAGCGAGCTAGGGACTACAAGAAAGAATATGGAGACTCCTTTGTGTCAGTGGAGCATTTGGTTCTTGCTTTTACTCAAGATAAACGATTTGGAAAACAGTTGTTCAGTGACTTTCGACTTTCTGAGAAAACATTGCGGTCTGCTATACAGGCTGTAAGGGGACGCCAATCAGTCATTGACCAAGATCCTGAAGGGAAATATGAAGCACTTGAGAAGTATGGAAAAGATTTGACCGCAATGGCAAGAGAAGGAAAGCTTGACCCAGTGATAGGAAGGGATGATGAGATACGTAGATGTATCCAAATTCTTTCCAGGAGAACCAAAAATAATCCTGTTCTGATCGGTGAACCTGGTGTGGGAAAAACTGCAATTGCTGAGGGGCTTGCTCAGAGGATAGTTGAAGGCGATGTTCCTCAAGCTCTGATGGACCGTAAGTTGATTTCTCTTGACATGGGAGCACTCATTGCTGGAGCTAAATATCGTGGAGAATTCGAGGATCGTCTGAAGGCTGTCTTAAAGGAAGTGACTGAGGCTGAGGGTCAGACAATCCTTTTTATCGATGAGATTCACACTGTGGTAGGAGCAGGTGCTACGAATGGTGCAATGGATGCTGGAAATCTGTTGAAGCCTATGCTGGGTCGTGGAGAGTTGCGATGCATTGGTGCTACTACACTTGATGAATATCGTAAATACATTGAGAAAGATCCAGCACTGGAGCGGCGATTTCAACAGGTTTATGTTGATCAGCCAAGTGTGGAAGATACTGTCTCGATATTACGTGGACTTCGTGAGAGATATGAGCTGCATCATGGGGTTAGGATTTCTGACAGTGCTCTTGTAGAGGCTGCAGTGCTCTCTGATCGTTACATTAGTGGGCGTTTCTTACCTGACAAAGCTATTGACTTGGTTGATGAAGCTGCTGCTAAACTGAAAATGGAGATCACTTCAAAACCTACTGCCCTTGATGAGATCAACCGTTCAGTGTTGAAGCTGGAGATGGAAAGGCTTTCTCTTAAGAATGATACTGACAAAGCTTCAAAGGAGAGGCTTAACCGACTTGACACAGAGCTTTCCCTACTAAAGGAAAAGCAAGCTGCATTGACTGAACAATGGGAGCATGAAAAAACTGTAATGACACGTATCCAATCAATTAAAGAAGAGATTGACAGGGTGAATATTGAGATCCAACAAGCTGAGCGAGAGTATGATCTTAATCGAGCTGCTGAGCTGAAGTATGGCAGCCTGAACTCGCTTCAGCGTCAGCTGGAAAGTGCAGAGAAAGAGCTGGATGAATACATGAAGTCTGGGAAGTCGATGTTACGGGAAGAAGTAACTGGGAATGACATTGCTGAAATAGTCAGCAAGTGGACTGGAATTCCTGTTTCCAAGCTACAACAGTCAGAGAGGGAGAAACTCTTGCATCTGGAAGAAGAGCTGCATAGACGTGTTGTGGGCCAAGATCCTGCAGTGCAAGCTGTAGCTGAGGCGATTCAGCGTTCTAGAGCTGGACTTTCAGATCCTCACCGTCCGATTGCTAGTTTCATGTTCATGGGGCCCACAGGTGTGGGAAAGACAGAGCTAGCAAAGGCGCTTGCCTCTTATTTATTTAACACTGAGGAAGCCCTTGTGCGGATCGATATGAGTGAATACATGGAAAAACATGCTGTGTCAAGACTGATAGGTGCCCCACCTGGCTATGTGGGCTACGAGGAAGGTGGCCAATTAACAGAGATAGTTCGGAGGAGACCATATGCAGTAATCCTATTTGATGAAATTGAAAAGGCCCATAGTGATGTCTTCAATGTATTCCTTCAAATTCTGGATGATGGCAGGGTGACAGATTCACAAGGACGGACGGTGAGCTTCACTAACACTGTCATTATTATGACATCAAATGTAGGATCACAATACATTCTCAGTGCTGATGATGACACATCACCGAAGGAGGTCACTTATGAAATAATAAAGCAAAGAGTGATGGATGCAGCTCGATCAATTTTCCGTCCCGAGTTCATGAATAGAGTAGATGAATACATAGTCTTCCAGCCCCTTGACCGAGATCAAATTAGCAGCATTGTCCGTTTACAGCTGGAACGACTACAGTCAAGGATTGCAGATCGTAAGATGAAAATTCAGGTGACAGATGCAGCAATTCAGCTTCTTGGTAGCCTGGGATATGATCCGAACTATGGTGCTAGGCCTGTCAAACGTGTTATACAACAACACGTTGAGAATGAAATTGCAAAAGGTATCTTGAGAGGGGAATTCAAGGAAGAAGACGCCATTCTTATTGATACAGAGCTCACAGCATTCTCAAATGGTCAGCTTCCACAACAGAAGTTGGTTTTCAAAAAACTAGAATCTGATTCAAGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_130598.p1 GENE.R_Transcript_130598~~R_Transcript_130598.p1 ORF type:3prime_partial len:966 (+),score=239.59,AAA_2|PF07724.10|0.058,AAA_2|PF07724.10|2.1e-55,Clp_N|PF02861.16|1.4e-15,Clp_N|PF02861.16|4.2e-11,AAA|PF00004.25|3.6e-14,AAA|PF00004.25|2.7e-09,ClpB_D2-small|PF10431.5|5.9e+03,ClpB_D2-small|PF10431.5|1.1e-24,AAA_5|PF07728.10|0.00085,AAA_5|PF07728.10|7.1e+03,AAA_5|PF07728.10|7.7e-12,AAA_16|PF13191.2|6.5e-05,AAA_16|PF13191.2|5.4e+02,AAA_16|PF13191.2|0.018,Sigma54_activat|PF00158.22|0.089,Sigma54_activat|PF00158.22|2e-06,AAA_17|PF13207.2|0.82,AAA_17|PF13207.2|9.3e-05,IstB_IS21|PF01695.13|0.013,IstB_IS21|PF01695.13|0.057,AAA_14|PF13173.2|0.044,AAA_14|PF13173.2|0.13,AAA_22|PF13401.2|3.6e+03,AAA_22|PF13401.2|0.074,AAA_22|PF13401.2|4.4e+02,AAA_22|PF13401.2|1.1e+04,AAA_22|PF13401.2|0.29,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|4.9e+03,AAA_18|PF13238.2|0.066,AAA_18|PF13238.2|3.3e+03 R_Transcript_130598:363-3257(+)
MTTTNLVARGHLTPANTGVRNALFSQPIVSFGLTLRPSSVKFIKALKLGKNFNNVSLNRSSGATKKNSRSGSFVVKCEASTGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKAGVDNTRLLEATDKYIQRQPKVLTESAGSMLGRDLEALIQRARDYKKEYGDSFVSVEHLVLAFTQDKRFGKQLFSDFRLSEKTLRSAIQAVRGRQSVIDQDPEGKYEALEKYGKDLTAMAREGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVEGDVPQALMDRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTEAEGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPSVEDTVSILRGLRERYELHHGVRISDSALVEAAVLSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLKNDTDKASKERLNRLDTELSLLKEKQAALTEQWEHEKTVMTRIQSIKEEIDRVNIEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELDEYMKSGKSMLREEVTGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHRRVVGQDPAVQAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILSADDDTSPKEVTYEIIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERLQSRIADRKMKIQVTDAAIQLLGSLGYDPNYGARPVKRVIQQHVENEIAKGILRGEFKEEDAILIDTELTAFSNGQLPQQKLVFKKLESDSS

Click here to download the sequence:
Link to NCBI Protein BLAST