Transcript Information: R_Transcript_130846.p1


Annotated TAIR IDAT3G62970.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23270636-23272698 | Forward length=287
E-Value8.6E-128
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21816287993688
Replicate 20.8365059926812
Replicate 32.0077618610174
Condition 2: 8 Hour
Replicate 12.3412779232426
Replicate 21.3363076797521
Replicate 32.8926869514561
Condition 3: 24 Hour
Replicate 12.8354263906726
Replicate 22.7239562773223
Replicate 30.95922211775247


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_130846.p1 GENE.R_Transcript_130846~~R_Transcript_130846.p1 ORF type:complete len:251 (+),score=15.45,zf-CHY|PF05495.8|2.9e-20,zf-CHY|PF05495.8|1.6e+04,zf-C3HC4_2|PF13923.2|1.9e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|3.8e+03,zf-C3HC4_2|PF13923.2|2.6e-08,zf-RING_2|PF13639.2|3.2e+02,zf-RING_2|PF13639.2|6.5e+03,zf-RING_2|PF13639.2|6.4e+03,zf-RING_2|PF13639.2|5e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|5e-06,zf-RING_UBOX|PF13445.2|3.7e+03,zf-RING_UBOX|PF13445.2|9.6e+03,zf-RING_UBOX|PF13445.2|7.8e+03,zf-RING_UBOX|PF13445.2|7.5e-06,zf-RING_UBOX|PF13445.2|3.8e+02 R_Transcript_130846:218-970(+)
ATGGCGGAAGAAACCTCTTCTGTTCCCGAAAACCGTGAAGACGACAGTTCTGTTCCCGAAAACACCAACCGTGAAGATTTCGGCAAATTGCAATTCGGATGCGAGCATTACAGAAGAAGATGCAGAATAGTAGCGCCGTGTTGCAATCGAGTTTTCACCTGTCGTCACTGCCATAACGAGGCCATGAGCTCAGTAAGCAATCCTAAGGAGAGACACGAGCTTGTTCGCCATGAAGTTAAGCGAGTTGTTTGTGCTGTTTGTGATATTGAGCAACCGGTTGCTAAAGTTTGCTCTAATTGTGGTGTTAATTTGGGAGAGTATTTCTGTCACGTCTGCAAATTTTATGATGACGAGATTAGTAAAAAACAATTCCATTGTGATGATTGTGGGATTTGCAGGGTTGGTGGTCGTGAGAACTTCTTCCATTGCCCGAAGTGTGGGTCTTGCTATTCAATGGGTCTCCGTGATAATCACTTGTGTGTGGAGAATGCCATGAAGAATTGTTGTCCCATCTGTTACGAGTATCTTTTCGACTCAATCAAAGGCACAACAGTTATGAGGTGTGGACATACGATACACATGGATTGCTATAATGAGATGTTAAAACAGAAGCAGTACCGATGTCCCATATGCTCCAAGTCGACGGTGGACATGTCTAGAAACTGGGAAAGATTAGATGAGGAGATAAGCAAAAACATAGAAAGTCATTCTACATGCTTTGCTTATGGGTTGAAGGGATCTTCTTGTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_130846.p1 GENE.R_Transcript_130846~~R_Transcript_130846.p1 ORF type:complete len:251 (+),score=15.45,zf-CHY|PF05495.8|2.9e-20,zf-CHY|PF05495.8|1.6e+04,zf-C3HC4_2|PF13923.2|1.9e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|3.8e+03,zf-C3HC4_2|PF13923.2|2.6e-08,zf-RING_2|PF13639.2|3.2e+02,zf-RING_2|PF13639.2|6.5e+03,zf-RING_2|PF13639.2|6.4e+03,zf-RING_2|PF13639.2|5e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|5e-06,zf-RING_UBOX|PF13445.2|3.7e+03,zf-RING_UBOX|PF13445.2|9.6e+03,zf-RING_UBOX|PF13445.2|7.8e+03,zf-RING_UBOX|PF13445.2|7.5e-06,zf-RING_UBOX|PF13445.2|3.8e+02 R_Transcript_130846:218-970(+)
MAEETSSVPENREDDSSVPENTNREDFGKLQFGCEHYRRRCRIVAPCCNRVFTCRHCHNEAMSSVSNPKERHELVRHEVKRVVCAVCDIEQPVAKVCSNCGVNLGEYFCHVCKFYDDEISKKQFHCDDCGICRVGGRENFFHCPKCGSCYSMGLRDNHLCVENAMKNCCPICYEYLFDSIKGTTVMRCGHTIHMDCYNEMLKQKQYRCPICSKSTVDMSRNWERLDEEISKNIESHSTCFAYGLKGSSCW*

Click here to download the sequence:
Link to NCBI Protein BLAST