Transcript Information: R_Transcript_130847.p1


Annotated TAIR IDAT3G62970.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23270636-23272698 | Forward length=287
E-Value3.3E-152
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.47218427621
Replicate 211.485781063968
Replicate 313.568450840927
Condition 2: 8 Hour
Replicate 114.162556032205
Replicate 221.65966951864
Replicate 320.681451821835
Condition 3: 24 Hour
Replicate 115.998471935682
Replicate 215.21582320674
Replicate 316.701767687911


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_130847.p1 GENE.R_Transcript_130847~~R_Transcript_130847.p1 ORF type:complete len:287 (+),score=19.41,zinc_ribbon_6|PF14599.2|1.2e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|2.6e-25,zf-CHY|PF05495.8|3.8e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|8.2e+02,zf-C3HC4_2|PF13923.2|2.5e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|3.2e-08,zf-C3HC4_2|PF13923.2|3.4e+02,zf-RING_2|PF13639.2|4.9e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.5e+03,zf-RING_2|PF13639.2|4.5e-07,zf-RING_2|PF13639.2|2.4e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.6e-06,zf-C3HC4|PF00097.21|1.6e+04 R_Transcript_130847:218-1078(+)
ATGGCGGAAGAAACCTCTTCTGTTCCCGAAAACCGTGAAGACGACAGTTCTGTTCCCGAAAACACCAACCGTGAAGATTTCGGCAAATTGCAATTCGGATGCGAGCATTACAGAAGAAGATGCAGAATAGTAGCGCCGTGTTGCAATCGAGTTTTCACCTGTCGTCACTGCCATAACGAGGCCATGAGCTCAGTAAGCAATCCTAAGGAGAGACACGAGCTTGTTCGCCATGAAGTTAAGCGAGTTGTTTGTGCTGTTTGTGATATTGAGCAACCGGTTGCTAAAGTTTGCTCTAATTGTGGTGTTAATTTGGGAGAGTATTTCTGTCACGTCTGCAAATTTTATGATGACGAGATTAGTAAAAAACAATTCCATTGTGATGATTGTGGGATTTGCAGGGTTGGTGGTCGTGAGAACTTCTTCCATTGCCCGAAGTGTGGGTCTTGCTATTCAATGGGTCTCCGTGATAATCACTTGTGTGTGGAGAATGCCATGAAGAATTGTTGTCCCATCTGTTACGAGTATCTTTTCGACTCAATCAAAGGCACAACAGTTATGAGGTGTGGACATACGATACACATGGATTGCTATAATGAGATGTTAAAACAGAAGCAGTACCGATGTCCCATATGCTCCAAGTCGACGGTGGACATGTCTAGAAACTGGGAAAGATTAGATGAGGAGATTGGAGCTACTGCCATGCCTGATGAATATCGATATGAGGTTTTAATCCTCTGCAATGATTGCACCAATACAAGCAGAGTGAAATTTCACATATTTGGTCACAAGTGCAGTCACTGCGGCTCCTACAATACTTGTGTAACCCAGAAATTAGACTCTCAGCAGGAGCCATCAGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_130847.p1 GENE.R_Transcript_130847~~R_Transcript_130847.p1 ORF type:complete len:287 (+),score=19.41,zinc_ribbon_6|PF14599.2|1.2e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|2.6e-25,zf-CHY|PF05495.8|3.8e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|8.2e+02,zf-C3HC4_2|PF13923.2|2.5e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|3.2e-08,zf-C3HC4_2|PF13923.2|3.4e+02,zf-RING_2|PF13639.2|4.9e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.5e+03,zf-RING_2|PF13639.2|4.5e-07,zf-RING_2|PF13639.2|2.4e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.6e-06,zf-C3HC4|PF00097.21|1.6e+04 R_Transcript_130847:218-1078(+)
MAEETSSVPENREDDSSVPENTNREDFGKLQFGCEHYRRRCRIVAPCCNRVFTCRHCHNEAMSSVSNPKERHELVRHEVKRVVCAVCDIEQPVAKVCSNCGVNLGEYFCHVCKFYDDEISKKQFHCDDCGICRVGGRENFFHCPKCGSCYSMGLRDNHLCVENAMKNCCPICYEYLFDSIKGTTVMRCGHTIHMDCYNEMLKQKQYRCPICSKSTVDMSRNWERLDEEIGATAMPDEYRYEVLILCNDCTNTSRVKFHIFGHKCSHCGSYNTCVTQKLDSQQEPSG*

Click here to download the sequence:
Link to NCBI Protein BLAST