Transcript Information: R_Transcript_132186.p1


Annotated TAIR IDAT1G63020.1
Annotated Gene Namenuclear RNA polymerase D1A
Annotated Gene Symbol(s)NRPD1A, POL IVA, SDE4, NRPD1, SMD2
Annotation TypeOrtholog
Chromosome Positionchr1:23355329-23361126 | Reverse length=1453
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0473622352542
Replicate 22.2850183204595
Replicate 34.3587084542987
Condition 2: 8 Hour
Replicate 13.854722065617
Replicate 23.3977520662171
Replicate 35.1932739488855
Condition 3: 24 Hour
Replicate 15.044117809783
Replicate 23.8041924985801
Replicate 35.5730500640149


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_132186.p1 GENE.R_Transcript_132186~~R_Transcript_132186.p1 ORF type:complete len:1461 (+),score=323.11,RNA_pol_Rpb1_2|PF00623.16|1.2e+04,RNA_pol_Rpb1_2|PF00623.16|4.8e-31,RNA_pol_Rpb1_2|PF00623.16|7e+03,DUF3223|PF11523.4|2.9e-23,RNA_pol_Rpb1_1|PF04997.8|3.6e-15,RNA_pol_Rpb1_3|PF04983.14|4.6e-15,RNA_pol_Rpb1_4|PF05000.13|1.1e-09,RNA_pol_Rpb1_4|PF05000.13|1e+04,RNA_pol_Rpb1_5|PF04998.13|0.01,RNA_pol_Rpb1_5|PF04998.13|0.011 R_Transcript_132186:434-4816(+)
ATGGAAAATGCTATTGATATTGAGAATCAAGTTCCAGAAGGGGTCCTGACTGGCATCAAATTTAATGTTCTGACAGAAGACGACGCAGAAAAGATATCTGTGCTATCTATTGAAACACCTGCAGGTGTAACTGATCCAAAGCTGGGTTTCCCTAATCCTGCTTCTGAATGTGCCACCTGTGGTGCCAGAAACACTAAGCGCTGTGAAGGTCATTTTGGGGTTATCAATTTTCCATACACCATACTCCATCCCTATTATATATCTGAAGTTGTACACATTTTGAACAAAATTTGCCCCGGATGTAAATCTCTTCGGAGAGAACGTCAGGCTAAGGGTGCCAAAGGAATCACTAAGCTTGATCAGTTCAGGGGTTGTAAATATTGTACAGGAAGGTATCCATCTATCAGATTCAAACTTTCAACAAACAAAAAAGACTTGTTTTGGAAGACGGCAATTATAGTAGAACTTAATGAGAGGTCACAAAACAAGTATGAGCTGGAGAATTATTGGGATTTCATTCCTAAAGATGTCCAAGTTGAAGAAAGTAGCAACCCAAATAAAAGAGTGCTGTCACATGCACAGGTCCATCAGTTGCTAAAAGGTGTTGATCCAAGCTTCATAAAAGAGTTTGTTTCAAGAATAGATGCGCTCTTCCTTAACTGCTTCCCAGTGACACCTAATTGTCACCGTGTCACTGAACTTGTCCATCCATTTTCTAGTGGCCAAAAGTTAATTTTTGATGACCGGACTAGGGCTTTCAGGAAATTGGTTGATTTCAGGGGCACTGCCAATGAGTTGGGTGTTCGTGTCCTGGACTGTCTGAAACTTTCAAAGTTGCGTCTTGAGAAGTCAAGTAATGATTCTGCTTTGATGACCAATATAGATGCAGCACTAAATTCCTCTGCATCGAAATGGATGAAAGAAGTAGTTCTCACTAAACGAAGTGACCACATTATCCGCTCTGTTGTCACTGGTGATCCTAACTTGAAGATCTATGAAATTGGCATTCCTTGCTATATCGCAGAAAGACTGCAAATCTCCGATCATCTGAACTACTTGAACTGGAAGAAGTTGACTGGCAGCTGCAACTTGAAGCTTCTTGAGAAAGGGGAGGTCTATGTCCGGAGAAAAGGTGACCTGGTTCGTGTTCGTGAGACAGATGAACTCCAATTTGGAGACCTGATATACAGGCCTTTGGATGATGGTGATATAATGCTAATAAATCGGCCTCCATCAATTCATCAACATTCAATGCTTGCTTTACATGTGAAGATTCTTCCAATAAATTCTGTTGTCTCTATAAACCCACTGTGTTGTGCTCCCTTGCGTGGAGATTTTGATGGTGATTGCCTTCATGGCTATGTGCCACAATCAATGGAAGCAAGGGTGGAGCTCAGGGAGCTTGTAGGATTGGATAGGCAGCTAAGAAATGGACAGAGTGGAAGAAACCTGCTATCACTTAGTCATGATAGCTTGACTGCTGCTCATTTGCTCATGGCAGAAGGTGAACTTATGTCCCAACCTCAAATACAGCAACTGAAGATGTTGTGTCCTCGGCAGTTGATGTCACCAGCCATAAAAAAAACACATTTCATTAAATCGGATTTGTGGACTGGGAAGCAATTGTTTAGCATGATACTGCCACCTGAATTTAATTACATCTCTCCTTCAAATGGTGTTATCATCAATAAAGGAGAACTTCTCTTATCTCCTGATGGGTCCGTGTGGTTGCGTGGGGATGCAGATGGAAACTTCTTTGAAAGCCTTATCGATCATTGCTATGGGGAGGTCCTTGACTATCTTGATGCTGCTCAGAGAGTTCTCTGTGAGTGGCTATCATCGAGGGGCTTGAGTGTCTCTCTGCTAGACATCTATCTATGTTCTGATGCACACTCTCATAGGAATTTGATTGACGAAATTTCTTGCGGTTTGGAAGAAGCAGAGATGACCTGTCATCTGAAACAGTTGATGGTTGAGTCTTCTGTCAGTCATCTCATAGATAGTGATGAAGAAGGCAAAAGCTCTGCGTCACTTCAGGTGGAGAAGCTATGTTATGAAAAGCAGAAATCAGCTGCACTAACTCGAGCTTCTTCCAATGCCTTCAAATTTATTTTTCGTGATATTCAGAACTTGACTTATCAATTTGCTCTTAGTGACAATTCATTGTTAGCCATGATAAAATCTGGAAGTAAAGGGAATCTGTTGAAAATTGTTCAGCAGAGCATGTGTCTTGGTTTACAGCATTCACTGGTCCCTTTGTCTTTTAGGCTTCCTCACAAGCTATCATGTGCTGCGTGGAATGACCTGAAAACACAAAGCTCAAGTATCAAGGATGGTATTATTCCTGAATGCACCAAAAGTTTCATCCCATTTGCTGTGGTTGGAAGTTCATTTGTTACAGGCCTGAATCCTCTGGAATGTTTTGTTCATTCTGTGACAAGTCGAGATAGCACTTTCAGTGAGAATGCTGATGTTCCTGGGACCTTGACACGAAAGCTTACATTTTTCATGCGTGACATACAGTTGGCTTATGATGGTACTGTAAGAAATGCATATGGGAACCAAGTTGTTCAGTTTTCTTATGCTGCTGCAAAGGATAAGTCTACATCTCTTGATAGAAGTGATGCTGATGAGAGCATGAAGGCTAATGATGCTATTGGAGGCCAACCTGTTGGTGCTTTAGCAGCTTGTGCCATGTCTGAAGCTGCATACAGTGCATTGGACCAACCAGTCAGCATTTTAGAACCATCACCTCTGTTAAATTTTAAGAAAATCATGGAGAGTGGTTCAAGGAAAAGCAAAGGACAAAGGACTGTTTCATTATTTTTGTCTGAGAAGCTCCGAAGGTTGCGCTATGGTTATGAATATGGGGCCTTAGAGGTTAAGAATCATCTTGAGAAAGTTCTATTTTCTGATATAGTCTCAACGGTCATGATCTTTTACTCCTCGCATACCTCCAGTCGGGTGAATACATGTCCTTGGGTTTGCCACTTTCACTTGCGCAAGGAGATTTTGAAAAGAAGGCGGCTCAAAGTCCTCTCTGTTATTGATGCCCTCAACAAGGAGTGTGAGGCAACTGCCTGCCTTACTAATGTTCAGATAATGAGCAAGAATGGCTGTCTAACCAATGAAGGGAAGGAGCATGACGCTACAATATGCATTACTGCCACAAGTAATGAGTGTCCAAAGAAACCCTACACTGATTTGGATACAGTTCGAGATGTGATGATACCAAGTCTTTTGGGAGCTGTAGTAAAAGGATCTGTTGCGGTTGAGAAGGTAGATATCTTGTGGCATGATGAACTTGTTGATTCAAGGTCTAGGAAGTACTCAGAAGGTGGTGAATTATATCTGAGTGTCTCCCTTTCCACAAATTGCAAAATCATCAAGATGTGGAATTTATTAGTGGATGAATGTCTTCCGATCATGGGGTTGATTGATTGGACACGCAGCTATCCTGATGATTTGAGCGACATGTACTTAGCATATGGGATTGATGTAGCCTGGAGATCATTTCTCAGGAACTTGAACTCTGCTGTTAATGACGTAGGCAAGAGCATTCTTCCAGAACACTTAATCCTAGTGGCAGATTGTCTATCAGTAACAGGAGAATTTGTTGGGTTAAGTGCAAAAGGAATTGCACGGCAAAAATCTCATGTGTCTGTCTCGTCACCTTTCTTGCTGGCATGCTTTACTAATCCAGGTATTTCCTTCATAAAAGCTGCTAAGCGTGGAGCTGCTGATGAGCTGCAAGGAAGTCTAGATGCTTTGGCATGGGGAAGGATTCCTCATCTTGGTACTGGTGCACATTTTGAATTTGTATATTCTTGCAAGGGGCATGAAATAGAAAAGCCTGTGGATCCCTATAGCTTGTTGGGTAACCAAACAAGCCCCAATGAGGTTGACATAAAGGTCAAGGTACCAAATGGTCAGAAGCTTATATCTGAAAAGTGTGGTACTTACCACTTTAGTGGATTGTCACCTCCCAAAGTTTTCAAAAATCTGGGTATACCAAAGATACTCCTGCAGAAGCATCTTTCAGTGGCTGACATTTGGAGGCTCTCTCAGATGTGTAAGAATATACTGTACAAATATCCCATTGATCAGCGGCTGAGTGAATCAGATAAGATTAAGTTGATGACGGCTTTACAATTTCACCCGCGGAAGAAGGAGAAACTTGGGAATGGAGCTGTAGATATTAAGGTTGGCTCTCATTCTGATTATGAAGATAGCCGGTGCTTTATTTTGGAGAGGACTGATGGAACTTTTGAAGACTTTTCATACAAGAAGTGTGTTCTCGGTGCACTACAGGTTATTGCTCCTGGGAGGGCAAAAAGCTATCAAGCCAGATGGTCTAAAAATGGTTCAGTCCAGAAGGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_132186.p1 GENE.R_Transcript_132186~~R_Transcript_132186.p1 ORF type:complete len:1461 (+),score=323.11,RNA_pol_Rpb1_2|PF00623.16|1.2e+04,RNA_pol_Rpb1_2|PF00623.16|4.8e-31,RNA_pol_Rpb1_2|PF00623.16|7e+03,DUF3223|PF11523.4|2.9e-23,RNA_pol_Rpb1_1|PF04997.8|3.6e-15,RNA_pol_Rpb1_3|PF04983.14|4.6e-15,RNA_pol_Rpb1_4|PF05000.13|1.1e-09,RNA_pol_Rpb1_4|PF05000.13|1e+04,RNA_pol_Rpb1_5|PF04998.13|0.01,RNA_pol_Rpb1_5|PF04998.13|0.011 R_Transcript_132186:434-4816(+)
MENAIDIENQVPEGVLTGIKFNVLTEDDAEKISVLSIETPAGVTDPKLGFPNPASECATCGARNTKRCEGHFGVINFPYTILHPYYISEVVHILNKICPGCKSLRRERQAKGAKGITKLDQFRGCKYCTGRYPSIRFKLSTNKKDLFWKTAIIVELNERSQNKYELENYWDFIPKDVQVEESSNPNKRVLSHAQVHQLLKGVDPSFIKEFVSRIDALFLNCFPVTPNCHRVTELVHPFSSGQKLIFDDRTRAFRKLVDFRGTANELGVRVLDCLKLSKLRLEKSSNDSALMTNIDAALNSSASKWMKEVVLTKRSDHIIRSVVTGDPNLKIYEIGIPCYIAERLQISDHLNYLNWKKLTGSCNLKLLEKGEVYVRRKGDLVRVRETDELQFGDLIYRPLDDGDIMLINRPPSIHQHSMLALHVKILPINSVVSINPLCCAPLRGDFDGDCLHGYVPQSMEARVELRELVGLDRQLRNGQSGRNLLSLSHDSLTAAHLLMAEGELMSQPQIQQLKMLCPRQLMSPAIKKTHFIKSDLWTGKQLFSMILPPEFNYISPSNGVIINKGELLLSPDGSVWLRGDADGNFFESLIDHCYGEVLDYLDAAQRVLCEWLSSRGLSVSLLDIYLCSDAHSHRNLIDEISCGLEEAEMTCHLKQLMVESSVSHLIDSDEEGKSSASLQVEKLCYEKQKSAALTRASSNAFKFIFRDIQNLTYQFALSDNSLLAMIKSGSKGNLLKIVQQSMCLGLQHSLVPLSFRLPHKLSCAAWNDLKTQSSSIKDGIIPECTKSFIPFAVVGSSFVTGLNPLECFVHSVTSRDSTFSENADVPGTLTRKLTFFMRDIQLAYDGTVRNAYGNQVVQFSYAAAKDKSTSLDRSDADESMKANDAIGGQPVGALAACAMSEAAYSALDQPVSILEPSPLLNFKKIMESGSRKSKGQRTVSLFLSEKLRRLRYGYEYGALEVKNHLEKVLFSDIVSTVMIFYSSHTSSRVNTCPWVCHFHLRKEILKRRRLKVLSVIDALNKECEATACLTNVQIMSKNGCLTNEGKEHDATICITATSNECPKKPYTDLDTVRDVMIPSLLGAVVKGSVAVEKVDILWHDELVDSRSRKYSEGGELYLSVSLSTNCKIIKMWNLLVDECLPIMGLIDWTRSYPDDLSDMYLAYGIDVAWRSFLRNLNSAVNDVGKSILPEHLILVADCLSVTGEFVGLSAKGIARQKSHVSVSSPFLLACFTNPGISFIKAAKRGAADELQGSLDALAWGRIPHLGTGAHFEFVYSCKGHEIEKPVDPYSLLGNQTSPNEVDIKVKVPNGQKLISEKCGTYHFSGLSPPKVFKNLGIPKILLQKHLSVADIWRLSQMCKNILYKYPIDQRLSESDKIKLMTALQFHPRKKEKLGNGAVDIKVGSHSDYEDSRCFILERTDGTFEDFSYKKCVLGALQVIAPGRAKSYQARWSKNGSVQKA*

Click here to download the sequence:
Link to NCBI Protein BLAST