Transcript Information: R_Transcript_133957.p2


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value5E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1018103583182
Replicate 21.3036918559139
Replicate 31.4971723919054
Condition 2: 8 Hour
Replicate 11.3603258304025
Replicate 20.94997210436409
Replicate 31.8982076465764
Condition 3: 24 Hour
Replicate 12.700918497377
Replicate 21.9460522550509
Replicate 32.7180809741899


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_133957.p2 GENE.R_Transcript_133957~~R_Transcript_133957.p2 ORF type:complete len:306 (+),score=30.04,UBN2_3|PF14244.2|1.4e-13,UBN2|PF14223.2|6.2e-11,UBN2_2|PF14227.2|7.8e-09 R_Transcript_133957:59-976(+)
ATGGCTTCAGGACCACCAAACTCTGCTTCCCCTGATACTACTCAGCCTTCTTCTCCTCCATTCATCTCACAACCTCCTATAACCACTCCCATATCAAATCCTACTTTGTCTTTTTCTCCCCCACATCCAGAGGGCCTTTCGGCTCCTCCACTATCATGGGTATTTTCCCAACCTTCAATTCCACAAAACTTGTTTCCCAACTCTGTTTTCGAACATGGTGAGTCTAGTCAAAGTCGTCCCCCACCTCCGTTCTCTGTGGCAATTGGTTCAGGTTCACTTGGTCCGCATCTATTGGGTGGTTTTTCTCCCTCTATCTCAGGGCATGCGTTTCCTCCTGTCTCGGCTCCCAACGTCACCAATATTGTTACTACGACGTTGACCTCGGTTGACGATTTTTTATCCTGGAGAACACAATTTTCCGCCTTTCTAATATCTCAAGGCCTTGCTGGGTATGTTGATGGCTCCATTCCTCCTCCTGTTCAGTCCTTTGTCGACTCCTTTGGTGTGGTCAGGTACAATCCCGAATACTCTTCCTGGCTGCGTTATGATCAGAGTGTTCGTTGTTGGTTGTACACTACTTTGTCTAAAGAATTGTTGGTTGAGTTTCACGACATTCAACACTCTTATGAAATATGGAGTCGGTTGCATAATCGATTTAACACTGATAGCTTGGCACGTTCTATTGAATTAAAACGCTCTCTTACTATGATTAAAAAGACTGAACAACAATCTATGGAGGCCTATTTGCGTGATATTAAGAGAATTGCTGATGCCTTAGCGTCTATTCGTAGTCCGGTTGTTAATGAAGATCTAGTTCAATATACTCTTTTGGGTTTTCCCTCTGAATATGACACTCTGGGACTGTACTGTTGCATCAACCTGGCACTCTTGTTTTTGATGACTTACGTGCTAAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_133957.p2 GENE.R_Transcript_133957~~R_Transcript_133957.p2 ORF type:complete len:306 (+),score=30.04,UBN2_3|PF14244.2|1.4e-13,UBN2|PF14223.2|6.2e-11,UBN2_2|PF14227.2|7.8e-09 R_Transcript_133957:59-976(+)
MASGPPNSASPDTTQPSSPPFISQPPITTPISNPTLSFSPPHPEGLSAPPLSWVFSQPSIPQNLFPNSVFEHGESSQSRPPPPFSVAIGSGSLGPHLLGGFSPSISGHAFPPVSAPNVTNIVTTTLTSVDDFLSWRTQFSAFLISQGLAGYVDGSIPPPVQSFVDSFGVVRYNPEYSSWLRYDQSVRCWLYTTLSKELLVEFHDIQHSYEIWSRLHNRFNTDSLARSIELKRSLTMIKKTEQQSMEAYLRDIKRIADALASIRSPVVNEDLVQYTLLGFPSEYDTLGLYCCINLALLFLMTYVLN*

Click here to download the sequence:
Link to NCBI Protein BLAST