Transcript Information: R_Transcript_134970.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0313779127026
Replicate 22.3705500470014
Replicate 31.9951029519229
Condition 2: 8 Hour
Replicate 11.5007465612828
Replicate 21.442637538141
Replicate 31.3760091921906
Condition 3: 24 Hour
Replicate 11.7033211814103
Replicate 22.0988068944259
Replicate 32.0122567212147


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_134970.p1 GENE.R_Transcript_134970~~R_Transcript_134970.p1 ORF type:complete len:620 (+),score=127.05,UBN2_3|PF14244.2|2.4e-40,Retrotrans_gag|PF03732.13|1.3e-09 R_Transcript_134970:863-2722(+)
ATGGCTAGCAATTCTGAAAGTTCTAGTTCAAGTTCTTCTGCAACAATTGATATGACTCATCCTCTGTATTTGCATCCTAGTGATCATCCAGGAATGATGCTGGTTAGTTCTCCATTTGATGGTAATGGTTTCAATTCATGGAAGAGAGGTAAGCTTATTGCTTTGACTGCTAAGAATAAATTAGGTTTAGTGAATGGAACTGTTACTAAACCTGTTGCTGATTCTTCTATTCTGATGCTTTGGGAAAGATGCAATAATATGGTAATTTCATGGATTTTGAATGCTTTAGCAAGAGATATTGCAGATAGTGTTCTATATAATGATACTGCTGAACAAATTTGGAAGGATTTGAATGAAAGATTTGGACAATCTAATGGTCCACAGTTGTTTAGATTACAAAAGGATATAAATGAAACATCACAAGGTGATTCTGATGTGCCTACTTACTACACTAGAATGAAAAGACTCTGGGATGAACTTCATTCTTTAGATGTTATGCCTACATGTACATGTGGAGCAACACAGGAGATGATCAGAAGGGAACAAGAAAGAAAACTTATACAGTTTCTTATGGGACTAAATAATGATTTTTCAACTGCTAGAGGAAATATATTAATGATGAAGCCTTTGCCTAGTGTAGCTACAGCTTATTCCTTGCTAATGCAAGATGGTAACCAAAGAGAATTGATGACTGGACATAGCAATGTAAATTTTGTGAATGAAGCATCTTCATTTCTTGCTGGTGATCAGAGGAATTTTAGGAGAAATTTCTCAAAACCTGATTTCAGAGGAAATAATCAGAAGTTTGATTCAAGGAGAGACAATAGGAGACCTATCATGTTTTGTCAGTATTGCAAGAGACAAGGACACTCTGAGGAGAAATGTTGGAAGAAACATGGCTATCCTCCCCAATTTCAGCAAAATAATAAAGGGAACAGAATGGCTGCTGCAGTCACAAATGAGTTCTTTGAGGATTATTCTGTGGATGATAAAGATAACACAACTCAAAATACTGGTCAACCTGGAGTATCAGCTGGTTCTGGTAACACTGATTGTAGTAACACCTCTGCTGTCAACGATCTGAGTCCTGATCAATGTCAACAAATCATTCAATTTCTTGCTAATCAAATGAAAGGCACTTCTATACCATATTCTCAAGGGTCTGGCACTACTTTTGCTAATTTTGCTGGTAAGTCAGTTTGTCTTTCTTCTAGTAAACTAGCTTCTTGTACTTGTTTTAATTGTGTAGCTACTGCTGACATTATGTGGATAATTGACACTGGCGCATCTGATCATATGTGTTATGATCATTCTCTGTTCATTTCTACCTCTCCTTTTCCTAAATCCTTTCACATCACTCTTCCTACTGGAAATTATGTTCCTGTGACTCACTATGGTACTGTCAAGCTGAAAGATGACCTAGTTTTACACGATGTCTTGTATGTTCCATCTTTCAAATTCAACCTTCTCTCTACTGGAAAACTATGCAAGCAACTTGATGGAACTGTGGTGTTTACTAGTCACAATTGCACTTTGCAGGCCCCTTCAATGAAGAGGCCGCAGGAAATTGGTAAAGCACATGGAAGTCTTTACATATTCAAGCATGATACAAGAGTACTCAAGCATGAGATGGCTAAGGCACATGTTGTTTCTAATTCTGTTGTTCATAATAAGTCTGGAAAACAAGAGCATGTGATACATGTTGTTGATAATAATGCTGGTAATTGTACTTTGGGATCTTCTGCTACTGACAATGTAAATAACAACTCTACTGTTGCGAATGATAATATGTTTTGCTCTACTTTTCTTGCCAAATGCTCTTTAGATACATGGCATGCTAGATTGGGCCACCTACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_134970.p1 GENE.R_Transcript_134970~~R_Transcript_134970.p1 ORF type:complete len:620 (+),score=127.05,UBN2_3|PF14244.2|2.4e-40,Retrotrans_gag|PF03732.13|1.3e-09 R_Transcript_134970:863-2722(+)
MASNSESSSSSSSATIDMTHPLYLHPSDHPGMMLVSSPFDGNGFNSWKRGKLIALTAKNKLGLVNGTVTKPVADSSILMLWERCNNMVISWILNALARDIADSVLYNDTAEQIWKDLNERFGQSNGPQLFRLQKDINETSQGDSDVPTYYTRMKRLWDELHSLDVMPTCTCGATQEMIRREQERKLIQFLMGLNNDFSTARGNILMMKPLPSVATAYSLLMQDGNQRELMTGHSNVNFVNEASSFLAGDQRNFRRNFSKPDFRGNNQKFDSRRDNRRPIMFCQYCKRQGHSEEKCWKKHGYPPQFQQNNKGNRMAAAVTNEFFEDYSVDDKDNTTQNTGQPGVSAGSGNTDCSNTSAVNDLSPDQCQQIIQFLANQMKGTSIPYSQGSGTTFANFAGKSVCLSSSKLASCTCFNCVATADIMWIIDTGASDHMCYDHSLFISTSPFPKSFHITLPTGNYVPVTHYGTVKLKDDLVLHDVLYVPSFKFNLLSTGKLCKQLDGTVVFTSHNCTLQAPSMKRPQEIGKAHGSLYIFKHDTRVLKHEMAKAHVVSNSVVHNKSGKQEHVIHVVDNNAGNCTLGSSATDNVNNNSTVANDNMFCSTFLAKCSLDTWHARLGHLP*

Click here to download the sequence:
Link to NCBI Protein BLAST