Transcript Information: R_Transcript_135142.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0486913279009
Replicate 23.8716582327926
Replicate 34.3863965609654
Condition 2: 8 Hour
Replicate 12.2575620164127
Replicate 210.783971384402
Replicate 34.7631886025129
Condition 3: 24 Hour
Replicate 16.1872104585302
Replicate 24.3797677229515
Replicate 36.2092779253609


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_135142.p1 GENE.R_Transcript_135142~~R_Transcript_135142.p1 ORF type:5prime_partial len:141 (-),score=34.21 R_Transcript_135142:524-946(-)
CTCTGCATCTTTTCCACTATCTTGTTTATTATCACTTTAGATTGCCCACCAACTTCAGCAGGAGTTACATGGGTCATTGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAGTTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTGGTGGGAAATCTAAAGTGATAATAAACAAGATTGTTGAAAAGATGCAGCACCTAATATTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCAAACAGCTGAATTCAAAGATGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTGCAACAACAGGCAGCTGGTTTTGGCTCAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGAGAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_135142.p1 GENE.R_Transcript_135142~~R_Transcript_135142.p1 ORF type:5prime_partial len:141 (-),score=34.21 R_Transcript_135142:524-946(-)
LCIFSTILFIITLDCPPTSAGVTWVIVGKKLSVEETVDRAESLTDKLKSMAAEVGGKSKVIINKIVEKMQHLILVLKEWISQAGRQTAEFKDAASAKIGTSVQELQQQAAGFGSTVTEGAKRAVGDCREGVEKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST