Transcript Information: R_Transcript_13533.p1


Annotated TAIR IDAT3G17040.1
Annotated Gene Namehigh chlorophyll fluorescent 107
Annotated Gene Symbol(s)HCF107
Annotation TypeOrtholog
Chromosome Positionchr3:5809378-5812605 | Reverse length=652
E-Value1.6E-273
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.406562309176
Replicate 213.398761135225
Replicate 316.577667040133
Condition 2: 8 Hour
Replicate 15.5290662784102
Replicate 24.8296995842112
Replicate 37.0773460763921
Condition 3: 24 Hour
Replicate 115.423267408233
Replicate 211.104962050094
Replicate 314.642966529663


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_13533.p1 GENE.R_Transcript_13533~~R_Transcript_13533.p1 ORF type:5prime_partial len:713 (+),score=174.82,TPR_2|PF07719.13|15,TPR_2|PF07719.13|30,TPR_2|PF07719.13|57,TPR_2|PF07719.13|0.021,TPR_2|PF07719.13|0.011,TPR_2|PF07719.13|0.11,TPR_2|PF07719.13|15,TPR_2|PF07719.13|7.8e+02,TPR_2|PF07719.13|0.014,TPR_2|PF07719.13|1.4e+02,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|25,TPR_14|PF13428.2|0.015,TPR_14|PF13428.2|2.2,TPR_14|PF13428.2|1.6e+02,TPR_14|PF13428.2|0.00066,TPR_14|PF13428.2|1,TPR_14|PF13428.2|55,TPR_14|PF13428.2|0.099,TPR_14|PF13428.2|1.5e+02,TPR_16|PF13432.2|0.12,TPR_16|PF13432.2|9e-05,TPR_16|PF13432.2|0.0054,TPR_16|PF13432.2|0.00027,TPR_16|PF13432.2|0.028,TPR_16|PF13432.2|0.013,TPR_12|PF13424.2|0.00038,TPR_12|PF13424.2|2.7e+02,TPR_12|PF13424.2|0.00018,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|0.00013,TPR_11|PF13414.2|0.0067,TPR_11|PF13414.2|1.3,TPR_11|PF13414.2|0.3,TPR_11|PF13414.2|0.00038,TPR_11|PF13414.2|0.00013,TPR_11|PF13414.2|2.4,TPR_11|PF13414.2|1e+03,TPR_11|PF13414.2|0.69,TPR_11|PF13414.2|0.0038,TPR_19|PF14559.2|0.011,TPR_19|PF14559.2|0.0034,TPR_19|PF14559.2|0.0019,TPR_19|PF14559.2|0.033,TPR_19|PF14559.2|0.42,TPR_19|PF14559.2|13,TPR_19|PF14559.2|2e+03,TPR_17|PF13431.2|9.3e+02,TPR_17|PF13431.2|0.18,TPR_17|PF13431.2|7.3e+02,TPR_17|PF13431.2|0.15,TPR_17|PF13431.2|26,TPR_17|PF13431.2|16,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|5.9e+02,TPR_17|PF13431.2|5.6e+02,TPR_17|PF13431.2|1.4e+03,TPR_1|PF00515.24|28,TPR_1|PF00515.24|8.9e+02,TPR_1|PF00515.24|3.4,TPR_1|PF00515.24|0.97,TPR_1|PF00515.24|78,TPR_1|PF00515.24|9.3e+02,TPR_1|PF00515.24|1.8e+03,TPR_1|PF00515.24|0.23,TPR_1|PF00515.24|6.7e+03,TPR_8|PF13181.2|3,TPR_8|PF13181.2|54,TPR_8|PF13181.2|2.3e+02,TPR_8|PF13181.2|8.3,TPR_8|PF13181.2|71,TPR_8|PF13181.2|7.1e+02,TPR_8|PF13181.2|7.4e+03,TPR_8|PF13181.2|27,TPR_6|PF13174.2|33,TPR_6|PF13174.2|5.9e+02,TPR_6|PF13174.2|5.9e+02,TPR_6|PF13174.2|70,TPR_6|PF13174.2|92,TPR_6|PF13174.2|95,TPR_6|PF13174.2|1.2e+03,TPR_6|PF13174.2|30,TPR_6|PF13174.2|1.5e+03,TPR_7|PF13176.2|20,TPR_7|PF13176.2|56,TPR_7|PF13176.2|1.6e+03,TPR_7|PF13176.2|1.1e+03,TPR_7|PF13176.2|6e+02,TPR_7|PF13176.2|3.4e+03,TPR_7|PF13176.2|25,TPR_7|PF13176.2|99,TPR_10|PF13374.2|1.6,TPR_10|PF13374.2|9.6e+02,TPR_10|PF13374.2|1.4e+03,TPR_10|PF13374.2|71,TPR_10|PF13374.2|91,TPR_10|PF13374.2|9.8e+02,TPR_10|PF13374.2|46,TPR_10|PF13374.2|85,TPR_15|PF13429.2|1.9e+03,TPR_15|PF13429.2|7.8,TPR_15|PF13429.2|0.051,TPR_15|PF13429.2|0.00048 R_Transcript_13533:1-2139(+)
CCATATACCACGTCCTATTATCCACCAAAAAAAAAAAAAAAAATCAAACTGAAAACAAATTCTAAGAAAAACACAAACCTTAAAAAACATAAAAACAGGGGAAAACAGAGAAACAAAGAAAGAAAAAGCAAAGAAATGCAGCTCTTCAGTTCACCATCTTCTACATCATCCTCAGCTTCATCAACAACAACAACAACATCAAAACCAAGTTTCACGTTCTCAAGAACATCCCCAAAACACCCTCAAAGAACCAGAATAATCCCCATAAGGTCCCTCCAATCCCCTGCTTCTCACCTTTCAGTACCACCCTATACCTCCTCCAACAATGACCGTTCATCCACTGTTAATCTTCCAAAGTCTGATGAGATGGGCACTTCTAGGAGAGAGGATCTTGAGCAGATCCTTGTTCGCCGTCCTGTAATACAATCTGACGGCCAGGATGATGATGATGAAGATGAGGATGAAATGGACGGCGGAGATGAAAGCAGTGATGATGAAGATATTGATGATGATGATGATGAAGAGAAGAGAGAAAAGTCAGTTTTTGACGAGAGTTTGGAGAAGTTTGCAAAGAAGTTGCCTATGTTTGAGCCTGGTAGAGGTGGTCAAAGTGCTCAAGATAATGGAGGTGTTACCAAGGATCAGCCATTGAAGGTGAACTTGGATTTGGCTTTGTATAAAGCTAAGATTCTTACTAGGAACTTCCAGTTTCAAGAGGCTGAAAAGATACTTCAGCAGTGTATTGAATATTGGCCTGAAGATGGAAGGCCATATGTAGCCTTGGGAAAGGTAATGAGGAAGCAATCAAGAGTATCAGAAGCAAGGTCAGTGTATGAGAAAGGCTCTCAGGCTACTCAGGGAGAAAATGCCTTCATTTGGCAGTGTTGGGCTGTGTTGGAAAATGAGATGGGAAATGTAAGGAAAGCCCGGGAACTATTTGATGCGGCAACAGTAGCTGATAAGAAGCACATTGCAGCCTGGCATGGATGGGCAGTTTTGGAGTTGAAACAAGGAAATATTAAGAAGGCTAGAAATCTGCTTGGCAAAGCTATTAAATACTGTGGTGGAAATGAGTACGTATATCAGACACTTGCATTGCTCGAAGCTAAGGCTAATCGATATGAGCAGGCTCAGTATTTGTTCAGACAGGCCACCAAATGTAACCCGAAAAGTTGTGCTAGCTGGCTTGCATGGGCACAGTTAGAGATGCGGCAAGAGAACAATCCAGCTGCCCGATTTCTGTTTGAGAAAGCTGTCCAGGCTAGCCCAAAGAACAGATTTGCTTGGCATGTATGGGGGTTGTTTGAGGCTAATCTTGGAAACATTGATAAAGCAAGAAAACTTCTAAAAATAGGCCATCTTGTCAATGCAAGGGATCCTGTTCTTCTTCAGTCTCTTGCTTTGCTGGAGTACAAACATTCCACCGCGAATGTTTCCAGGGTGCTATTCAGGAGAGCGTCAGAATTGGATCCGAGGCACCAACCCGTATGGATTGCTTGGGGATGGATGGAGTGGAAGGAGGGAAATATTTCTACGGCAAGGGAACTGTACCAAAGAGCACTGTCAATCAATTCCACGAGTGAAAGTGCTGCTCGTTGCCTTCAGGCTTGGGGAGTCTTGGAACAAAGAGTTGGCAATATGTCAGCGGCTAGGAGATTATTCAGATCATCACTGAACATAAATTCGCAGAGCTATGTGACGTGGATGACTTGGGCATCTTTGGAGGAAGATCAAGGAAATTCTGTCCGCGCTGAGGAAATCCGTAACCTCTATTTCCAGCAGCGGACAGAAGTGGTAGACGATGCTTCATGGGTGATGGGGTTCATGGACATAATTGATCCTGCACTCGACAGCATAAAGAGGCTCTTGAACTTGGAGGACAATCCATTCTACAAGAAACCAGAGTTATCGGAGAACACAACTACGACTGAGGAGGCTAAGGATAAAGACGAGGAATCCTCTGAAGGCCAAAGCTTCAAGAGGAGCAACAGCAGTGGTTTTGATTTGGATGCATTCATCAAAGAGAAGTTGTCGCTTGATCCAACAAATCTTGACAACCAAATGGAAACATCTTTAACATCCATTGCGAGAACTAAGGAGGCCAAAAAGCCTTGGAGATCAAGGCAAAAATCTCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_13533.p1 GENE.R_Transcript_13533~~R_Transcript_13533.p1 ORF type:5prime_partial len:713 (+),score=174.82,TPR_2|PF07719.13|15,TPR_2|PF07719.13|30,TPR_2|PF07719.13|57,TPR_2|PF07719.13|0.021,TPR_2|PF07719.13|0.011,TPR_2|PF07719.13|0.11,TPR_2|PF07719.13|15,TPR_2|PF07719.13|7.8e+02,TPR_2|PF07719.13|0.014,TPR_2|PF07719.13|1.4e+02,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|25,TPR_14|PF13428.2|0.015,TPR_14|PF13428.2|2.2,TPR_14|PF13428.2|1.6e+02,TPR_14|PF13428.2|0.00066,TPR_14|PF13428.2|1,TPR_14|PF13428.2|55,TPR_14|PF13428.2|0.099,TPR_14|PF13428.2|1.5e+02,TPR_16|PF13432.2|0.12,TPR_16|PF13432.2|9e-05,TPR_16|PF13432.2|0.0054,TPR_16|PF13432.2|0.00027,TPR_16|PF13432.2|0.028,TPR_16|PF13432.2|0.013,TPR_12|PF13424.2|0.00038,TPR_12|PF13424.2|2.7e+02,TPR_12|PF13424.2|0.00018,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|0.00013,TPR_11|PF13414.2|0.0067,TPR_11|PF13414.2|1.3,TPR_11|PF13414.2|0.3,TPR_11|PF13414.2|0.00038,TPR_11|PF13414.2|0.00013,TPR_11|PF13414.2|2.4,TPR_11|PF13414.2|1e+03,TPR_11|PF13414.2|0.69,TPR_11|PF13414.2|0.0038,TPR_19|PF14559.2|0.011,TPR_19|PF14559.2|0.0034,TPR_19|PF14559.2|0.0019,TPR_19|PF14559.2|0.033,TPR_19|PF14559.2|0.42,TPR_19|PF14559.2|13,TPR_19|PF14559.2|2e+03,TPR_17|PF13431.2|9.3e+02,TPR_17|PF13431.2|0.18,TPR_17|PF13431.2|7.3e+02,TPR_17|PF13431.2|0.15,TPR_17|PF13431.2|26,TPR_17|PF13431.2|16,TPR_17|PF13431.2|1.2e+04,TPR_17|PF13431.2|5.9e+02,TPR_17|PF13431.2|5.6e+02,TPR_17|PF13431.2|1.4e+03,TPR_1|PF00515.24|28,TPR_1|PF00515.24|8.9e+02,TPR_1|PF00515.24|3.4,TPR_1|PF00515.24|0.97,TPR_1|PF00515.24|78,TPR_1|PF00515.24|9.3e+02,TPR_1|PF00515.24|1.8e+03,TPR_1|PF00515.24|0.23,TPR_1|PF00515.24|6.7e+03,TPR_8|PF13181.2|3,TPR_8|PF13181.2|54,TPR_8|PF13181.2|2.3e+02,TPR_8|PF13181.2|8.3,TPR_8|PF13181.2|71,TPR_8|PF13181.2|7.1e+02,TPR_8|PF13181.2|7.4e+03,TPR_8|PF13181.2|27,TPR_6|PF13174.2|33,TPR_6|PF13174.2|5.9e+02,TPR_6|PF13174.2|5.9e+02,TPR_6|PF13174.2|70,TPR_6|PF13174.2|92,TPR_6|PF13174.2|95,TPR_6|PF13174.2|1.2e+03,TPR_6|PF13174.2|30,TPR_6|PF13174.2|1.5e+03,TPR_7|PF13176.2|20,TPR_7|PF13176.2|56,TPR_7|PF13176.2|1.6e+03,TPR_7|PF13176.2|1.1e+03,TPR_7|PF13176.2|6e+02,TPR_7|PF13176.2|3.4e+03,TPR_7|PF13176.2|25,TPR_7|PF13176.2|99,TPR_10|PF13374.2|1.6,TPR_10|PF13374.2|9.6e+02,TPR_10|PF13374.2|1.4e+03,TPR_10|PF13374.2|71,TPR_10|PF13374.2|91,TPR_10|PF13374.2|9.8e+02,TPR_10|PF13374.2|46,TPR_10|PF13374.2|85,TPR_15|PF13429.2|1.9e+03,TPR_15|PF13429.2|7.8,TPR_15|PF13429.2|0.051,TPR_15|PF13429.2|0.00048 R_Transcript_13533:1-2139(+)
PYTTSYYPPKKKKKIKLKTNSKKNTNLKKHKNRGKQRNKERKSKEMQLFSSPSSTSSSASSTTTTTSKPSFTFSRTSPKHPQRTRIIPIRSLQSPASHLSVPPYTSSNNDRSSTVNLPKSDEMGTSRREDLEQILVRRPVIQSDGQDDDDEDEDEMDGGDESSDDEDIDDDDDEEKREKSVFDESLEKFAKKLPMFEPGRGGQSAQDNGGVTKDQPLKVNLDLALYKAKILTRNFQFQEAEKILQQCIEYWPEDGRPYVALGKVMRKQSRVSEARSVYEKGSQATQGENAFIWQCWAVLENEMGNVRKARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKAIKYCGGNEYVYQTLALLEAKANRYEQAQYLFRQATKCNPKSCASWLAWAQLEMRQENNPAARFLFEKAVQASPKNRFAWHVWGLFEANLGNIDKARKLLKIGHLVNARDPVLLQSLALLEYKHSTANVSRVLFRRASELDPRHQPVWIAWGWMEWKEGNISTARELYQRALSINSTSESAARCLQAWGVLEQRVGNMSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDSIKRLLNLEDNPFYKKPELSENTTTTEEAKDKDEESSEGQSFKRSNSSGFDLDAFIKEKLSLDPTNLDNQMETSLTSIARTKEAKKPWRSRQKSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST