Transcript Information: R_Transcript_13534.p1


Annotated TAIR IDAT3G17040.1
Annotated Gene Namehigh chlorophyll fluorescent 107
Annotated Gene Symbol(s)HCF107
Annotation TypeOrtholog
Chromosome Positionchr3:5809378-5812605 | Reverse length=652
E-Value4.2E-194
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.56510715030089
Replicate 20.19501207816995
Replicate 31.2765364604667
Condition 2: 8 Hour
Replicate 10.90969157698744
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.92399843331317
Replicate 20.81939042317934
Replicate 31.5585672068069


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_13534.p1 GENE.R_Transcript_13534~~R_Transcript_13534.p1 ORF type:complete len:323 (+),score=56.03,TPR_2|PF07719.13|42,TPR_2|PF07719.13|0.0078,TPR_2|PF07719.13|0.0041,TPR_2|PF07719.13|0.039,TPR_2|PF07719.13|5.8,TPR_2|PF07719.13|3.1e+02,TPR_2|PF07719.13|0.0051,TPR_2|PF07719.13|51,TPR_14|PF13428.2|0.012,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|58,TPR_14|PF13428.2|0.00023,TPR_14|PF13428.2|0.5,TPR_14|PF13428.2|21,TPR_14|PF13428.2|0.037,TPR_14|PF13428.2|53,TPR_14|PF13428.2|2.7e+03,TPR_16|PF13432.2|2.9e-05,TPR_16|PF13432.2|0.0018,TPR_16|PF13432.2|8.6e-05,TPR_16|PF13432.2|0.0091,TPR_16|PF13432.2|0.0043,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|5.8e-05,TPR_12|PF13424.2|70,TPR_12|PF13424.2|44,TPR_12|PF13424.2|4.2e-05,TPR_11|PF13414.2|0.14,TPR_11|PF13414.2|3.7e-05,TPR_11|PF13414.2|3.5e+02,TPR_11|PF13414.2|0.0011,TPR_19|PF14559.2|0.001,TPR_19|PF14559.2|0.00058,TPR_19|PF14559.2|0.0098,TPR_19|PF14559.2|0.14,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|4.1,TPR_19|PF14559.2|6.8e+02,TPR_1|PF00515.24|6.6e+02,TPR_1|PF00515.24|1.3,TPR_1|PF00515.24|0.36,TPR_1|PF00515.24|29,TPR_1|PF00515.24|3.7e+02,TPR_1|PF00515.24|7.5e+02,TPR_1|PF00515.24|0.086,TPR_1|PF00515.24|1.5e+03,TPR_17|PF13431.2|1.3e+04,TPR_17|PF13431.2|2.7e+02,TPR_17|PF13431.2|0.056,TPR_17|PF13431.2|9.4,TPR_17|PF13431.2|5.9,TPR_17|PF13431.2|3.5e+03,TPR_17|PF13431.2|2.3e+02,TPR_17|PF13431.2|2.1e+02,TPR_17|PF13431.2|5.1e+02,TPR_8|PF13181.2|4.6e+03,TPR_8|PF13181.2|81,TPR_8|PF13181.2|3,TPR_8|PF13181.2|26,TPR_8|PF13181.2|2.8e+02,TPR_8|PF13181.2|2.5e+03,TPR_8|PF13181.2|10,TPR_6|PF13174.2|2.3e+02,TPR_6|PF13174.2|26,TPR_6|PF13174.2|35,TPR_6|PF13174.2|35,TPR_6|PF13174.2|4.8e+02,TPR_6|PF13174.2|11,TPR_6|PF13174.2|5.6e+02,TPR_15|PF13429.2|24,TPR_15|PF13429.2|0.019,TPR_15|PF13429.2|5.1e-05 R_Transcript_13534:303-1271(+)
ATGTTTTCTATTATTTTTTGCTTGATATGCCTGCCTATGATACTACTACAGTGTTGGGCTGTGTTGGAAAATGAGATGGGAAATGTAAGGAAAGCCCGGGAACTATTTGATGCGGCAACAGTAGCTGATAAGAAGCACATTGCAGCCTGGCATGGATGGGCAGTTTTGGAGTTGAAACAAGGAAATATTAAGAAGGCTAGAAATCTGCTTGGCAAAGCTATTAAATACTGTGGTGGAAATGAGTACGTATATCAGACACTTGCATTGCTCGAAGCTAAGGCTAATCGATATGAGCAGGCTCAGTATTTGTTCAGACAGGCCACCAAATGTAACCCGAAAAGTTGTGCTAGCTGGCTTGCATGGGCACAGTTAGAGATGCGGCAAGAGAACAATCCAGCTGCCCGATTTCTGTTTGAGAAAGCTGTCCAGGCTAGCCCAAAGAACAGATTTGCTTGGCATGTATGGGGGTTGTTTGAGGCTAATCTTGGAAACATTGATAAAGCAAGAAAACTTCTAAAAATAGGCCATCTTGTCAATGCAAGGGATCCTGTTCTTCTTCAGTCTCTTGCTTTGCTGGAGTACAAACATTCCACCGCGAATGTTTCCAGGGTGCTATTCAGGAGAGCGTCAGAATTGGATCCGAGGCACCAACCCGTATGGATTGCTTGGGGATGGATGGAGTGGAAGGAGGGAAATATTTCTACGGCAAGGGAACTGTACCAAAGAGCACTGTCAATCAATTCCACGAGTGAAAGTGCTGCTCGTTGCCTTCAGGCTTGGGGAGTCTTGGAACAAAGAGTTGGCAATATGTCAGCGGCTAGGAGATTATTCAGATCATCACTGAACATAAATTCGCAGAGCTATGTGACGTGGATGACTTGGGCATCTTTGGAGGAAGATCAAGGAAATTCTGTCCGCGCTGAGGAAATCCGTAACCTCTATTTCCAGCAGGTCAGTTCTTGTCATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_13534.p1 GENE.R_Transcript_13534~~R_Transcript_13534.p1 ORF type:complete len:323 (+),score=56.03,TPR_2|PF07719.13|42,TPR_2|PF07719.13|0.0078,TPR_2|PF07719.13|0.0041,TPR_2|PF07719.13|0.039,TPR_2|PF07719.13|5.8,TPR_2|PF07719.13|3.1e+02,TPR_2|PF07719.13|0.0051,TPR_2|PF07719.13|51,TPR_14|PF13428.2|0.012,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|58,TPR_14|PF13428.2|0.00023,TPR_14|PF13428.2|0.5,TPR_14|PF13428.2|21,TPR_14|PF13428.2|0.037,TPR_14|PF13428.2|53,TPR_14|PF13428.2|2.7e+03,TPR_16|PF13432.2|2.9e-05,TPR_16|PF13432.2|0.0018,TPR_16|PF13432.2|8.6e-05,TPR_16|PF13432.2|0.0091,TPR_16|PF13432.2|0.0043,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|5.8e-05,TPR_12|PF13424.2|70,TPR_12|PF13424.2|44,TPR_12|PF13424.2|4.2e-05,TPR_11|PF13414.2|0.14,TPR_11|PF13414.2|3.7e-05,TPR_11|PF13414.2|3.5e+02,TPR_11|PF13414.2|0.0011,TPR_19|PF14559.2|0.001,TPR_19|PF14559.2|0.00058,TPR_19|PF14559.2|0.0098,TPR_19|PF14559.2|0.14,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|4.1,TPR_19|PF14559.2|6.8e+02,TPR_1|PF00515.24|6.6e+02,TPR_1|PF00515.24|1.3,TPR_1|PF00515.24|0.36,TPR_1|PF00515.24|29,TPR_1|PF00515.24|3.7e+02,TPR_1|PF00515.24|7.5e+02,TPR_1|PF00515.24|0.086,TPR_1|PF00515.24|1.5e+03,TPR_17|PF13431.2|1.3e+04,TPR_17|PF13431.2|2.7e+02,TPR_17|PF13431.2|0.056,TPR_17|PF13431.2|9.4,TPR_17|PF13431.2|5.9,TPR_17|PF13431.2|3.5e+03,TPR_17|PF13431.2|2.3e+02,TPR_17|PF13431.2|2.1e+02,TPR_17|PF13431.2|5.1e+02,TPR_8|PF13181.2|4.6e+03,TPR_8|PF13181.2|81,TPR_8|PF13181.2|3,TPR_8|PF13181.2|26,TPR_8|PF13181.2|2.8e+02,TPR_8|PF13181.2|2.5e+03,TPR_8|PF13181.2|10,TPR_6|PF13174.2|2.3e+02,TPR_6|PF13174.2|26,TPR_6|PF13174.2|35,TPR_6|PF13174.2|35,TPR_6|PF13174.2|4.8e+02,TPR_6|PF13174.2|11,TPR_6|PF13174.2|5.6e+02,TPR_15|PF13429.2|24,TPR_15|PF13429.2|0.019,TPR_15|PF13429.2|5.1e-05 R_Transcript_13534:303-1271(+)
MFSIIFCLICLPMILLQCWAVLENEMGNVRKARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKAIKYCGGNEYVYQTLALLEAKANRYEQAQYLFRQATKCNPKSCASWLAWAQLEMRQENNPAARFLFEKAVQASPKNRFAWHVWGLFEANLGNIDKARKLLKIGHLVNARDPVLLQSLALLEYKHSTANVSRVLFRRASELDPRHQPVWIAWGWMEWKEGNISTARELYQRALSINSTSESAARCLQAWGVLEQRVGNMSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQVSSCH*

Click here to download the sequence:
Link to NCBI Protein BLAST